F2 population size for resistance to root and stalk lodging in maize

--Stojkov, S, Rosulj, M, Stankovic G

Root and stalk lodging is one of the most important traits in commercial maize breeding. One of the main causes of increased root and stalk lodging is the presence of pathogens from the species Fusarium, so the maize breeder must pay special attention to resistance to these pathogens during the process of selection. An F2 population is a generation of maximum gene recombination. The influence of F2 population size has been studied in many papers for grain yield and other traits, but there is no literature on the optimal size of the F2 population necessary to develop hybrid combinations resistant to pathogens of maize root and stalk lodging. The objectives of this study were to estimate changes in genetic parameters with changes in population sizes and to obtain an F2 population size adequate for traits such as resistance to root and stalk lodging

The genetic material evaluated in the present study was F2 population S-5892 derived from a cross of two inbred lines, L588 and B92. Inbred line L588 is a dent type, derived from crossing B84 × Yugoslavian germplasm. FAO maturity group is 550. L588 has good general combining ability and is tolerant to root and stalk lodging. Public inbred line B92 is a semi-dent type. FAO maturity group is 700. B92 has excellent general combining ability, but is sensitive to root lodging in Yugoslavian conditions. The F1 generation L588 × B92 was self-pollinated in 1992 to obtain an F2 population. In 1993, 500 S0 plants from F2 population S-5892 were self-pollinated (plants were randomly selected) and crossed to six plants of inbred line L1325 as a tester. Inbred line L1325 is a flint type, derived from Argentinean germplasm. FAO maturity group is 450. L1325 shows high heterotic effects with both L588 and B92 inbred lines, and is tolerant to root lodging.

A total of 500 entries (half-sib progenies) were evaluated within 25 sets (Cochran and Cox, 1957). Each set consisted of 20 half-sib progenies completely randomised within each of three replications. The entries were grown at Zemun Polje, Velika Plana, Indjija and Becej in 1994, and Zemun Polje, Velika Plana and Becej in 1995. A plot consisted of 9.20m long hand-planted rows with 0.70m between rows. Over-planted plots were thinned to a uniform plant density of approximately 62.112 plants ha-1. All experiments were machine-cultivated and manually weeded as necessary for proper weed control. Data were collected at harvest for root and stalk lodging according to the following scale: 1-stalk broken bellow the tassel, 2-stalk broken above the ear, 3-stalk broken at the level of the ear, 4-stalk broken bellow the ear, 5-totally lodged stalk.

The analysis of data was based on plot means. Data were analysed by pooling over sets and combining across environments. From a basic population size of 500 half-sib progenies (25 sets with 20 half-sib progenies), 53,130 (25/5) populations with a size of 100 half-sib progenies, 3.268,760 (25/10) populations with a size of 200 half-sib progenies and 3.268,760 (25/15) populations with a size of 300 half-sib progenies were obtained by computer simulation. From the total number of combinations, 30 samples for each population sizes were randomly selected (except the 500 where only one sample is possible).

Comparisons of mean values between different population sizes were done by t or t′ test in relation to whether variances were homogenous or not (Steel and Torrie, Principles and procedures of statistics, McGraw-Hill Book Co., New York, 1960). Half-sib family means from each sample were used to construct the distribution histogram for each population. The Komogorov-Smirnov one-sample test was applied to test distribution. Values of D that are significant indicate non-normality of the distribution (Snedecor and Cochran, Statistical Methods, 8th ed., Iowa State University Press, Ames, 1989).

The analyses of individual populations pooled over sets and combined across environments were calculated to partition the within population variation for each population size into environments, sets, environments × sets interaction, replications, genotypes, genotypes × environments and error sources of variation. Genotypes × environments interaction mean squares were used to test significance of the genotype source of variation. Error mean squares were used to test significance of the genotypes × environments interaction source of variation.

Estimates of genetic variance components were calculated by equating observed mean squares with expected mean squares and solving the resulting system of equations. Heritability was estimated on a half-sib progeny mean basis within each population size. Genetic variance component and heritability estimates were declared significant if their values were 2 times greater than their standard errors (Falconer, Introduction to quantitative genetics, Longman, London and New York, 1989). Additive, dominance, and epistatic variance components are confounded in the genetic variance estimates for half-sib families; hence, heritability estimates should be considered an upper limit of the narrow-sense heritability (Lamkey and Hallauer, Maydica, 32:64–78, 1999).

Average estimates ranged from 1.712 for 200 HS progenies population size to 1.730 for 100 HS progenies population size. The maximum (1.826) and minimum (1.631) sample average estimate was found in the population size of 100 HS progenies (Table 1). There is no significant difference for average estimates between estimated population sizes (Table 2).

According to the Komogorov-Smirnov test, a lower value of parameter D indicates a greater normality of distribution. The values of parameter D became greater with the decrease of population size (500 HS, D = 0.0469; 300 HS, D = 0.0529; 200 HS, D = 0.0543; 100 HS D = 0.0469), but there is no evidence of statistically significant deviation from normality in any sample (Table 3).

Genetic variability of estimated half-sib progenies was at a satisfactory level for all population sizes investigated. Estimates of genetic variances were statistically significant for all samples and population sizes and ranged from 0.192 for 100 HS progenies population size to 0.232 for 300 HS progenies population size (Tables 4, 5, 6 and 7).

Values for genetic × environment variance interaction were also statistically significant for all samples and population sizes and ranged from 0.257 for 200 HS progenies population size to 0.283 for 100 HS population size (Tables 4, 5, 6 and 7). Statistically significant estimates of heritability were found for all samples in all population sizes. Their values ranged from 0.585 (100 HS progenies population size) to 0.647 (500 HS progenies population size) (Tables 4, 5, 6 and 7).

These results point to the possibility of working with a lower number of plants per F2 population for traits such as tolerance to root and stalk lodging.

 

Table 1. Mean values and standard errors for different population sizes.

Sample Population size
  100 200 300 500
1 1.757±0.027 1.724±0.026 1.738±0.028 1.717±0.028
2 1.778±0.031 1.719±0.029 1.676±0.028  
3 1.721±0.028 1.748±0.026 1.665±0.029  
4 1.728±0.029 1.656±0.027 1.714±0.028  
5 1.656±0.030 1.677±0.031 1.702±0.028  
6 1.853±0.029 1.681±0.028 1.782±0.029  
7 1.669±0.026 1.755±0.029 1.762±0.028  
8 1.768±0.028 1.725±0.028 1.732±0.027  
9 1.725±0.026 1.729±0.027 1.738±0.028  
10 1.766±0.030 1.660±0.028 1.729±0.028  
11 1.653±0.030 1.732±0.029 1.705±0.029  
12 1.751±0.025 1.723±0.027 1.701±0.028  
13 1.713±0.029 1.725±.0.029 1.755±0.028  
14 1.666±0.029 1.629±0.027 1.686±0.028  
15 1.660±0.027 1.686±0.027 1.710±0.027  
16 1.789±0.028 1.741±0.028 1.765±0.028  
17 1.750±0.031 1.741±0.028 1.733±0.029  
18 1.692±0.027 1.729±0.027 1.720±0.028  
19 1.728±0.027 1.756±0.028 1.692±0.028  
20 1.631±0.030 1.718±0.027 1.676±0.029  
21 1.774±0.026 1.690±0.030 1.717±0.028  
22 1.726±0.029 1.740±0.028 1.710±0.027  
23 1.762±0.027 1.697±0.028 1.694±0.028  
24 1.698±0.025 1.752±0.028 1.764±0.027  
25 1.798±0.031 1.676±0.028 1.728±0.028  
26 1.709±0.029 1.710±0.029 1.737±0.027  
27 1.826±0.029 1.673±0.026 1.689±0.029  
28 1.641±0.032 1.724±0.027 1.733±0.027  
29 1.738±0.028 1.709±0.028 1.762±0.029  
30 1.743±0.026 1.741±0.028 1.710±0.029  
Max 1.826 1.756 1.782  
Min 1.629 1.629 1.665  
Average 1.730 1.712 1.720 1.717

 

Table 2. Differences between mean values from estimated population sizes.

Population size 100 200 300 500
100 1.730 0.018ns 0.010ns 0.013ns
200   1.712 0.008ns 0.005ns
300     1.720 0.003ns
500       1.717

ns = statistically non-significant difference

 

Table 3. Values of parameter D from the Komogorov-Smirnov one sample test for different population sizes.

Sample Population size
  100 200 300 500
1 0.0522 0.0491 0.0443 0.0469
2 0.0734 0.0592 0.0503  
3 0.0637 0.0474 0.0665  
4 0.0937 0.0540 0.0537  
5 0.0568 0.0660 0.0543  
6 0.0841 0.0513 0.0490  
7 0.1004 0.0496 0.0640  
8 0.0615 0.0538 0.0432  
9 0.0691 0.0552 0.0534  
10 0.0551 0.0535 0.0365  
11 0.0794 0.0420 0.0533  
12 0.0628 0.0557 0.0634  
13 0.0720 0.0504 0.0604  
14 0.0807 0.0506 0.0503  
15 0.0543 0.0420 0.0504  
16 0.0650 0.0552 0.0479  
17 0.0555 0.0538 0.0513  
18 0.0592 0.0504 0.0522  
19 0.0613 0.0521 0.0633  
20 0.0976 0.0506 0.0527  
21 0.0670 0.0659 0.0505  
22 0.0514 0.0505 0.0512  
23 0.0589 0.0501 0.0438  
24 0.0830 0.0522 0.0613  
25 0.0517 0.0849 0.0513  
26 0.0823 0.0522 0.0532  
27 0.0590 0.0501 0.0579  
28 0.0514 0.0659 0.0589  
29 0.0727 0.0503 0.0491  
30 0.0630 0.0646 0.0494  
Average 0.0679 0.0543 0.0529 0.0469
Probability 0.95
0.99
0.95
0.99
0.95
0.99
0.95
0.99
Critical value 0.1223
0.1512
0.0860
0.1071
0.0706
0.8720
0.0547
0.0678

 

Table 4. Estimate of genetic variance, genetic × environment interaction variance, heritability, and their standard error for a population size of 100 half-sib progenies.

  Population size — 100 half-sib progeny
Sample σ2G SEσ2G σ2GXE SEσ2GXE h2 SEh2
1 0.167 0.042 0.223 0.025 0.583 0.146
2 0.191 0.052 0.320 0.029 0.541 0.146
3 0.213 0.049 0.243 0.026 0.627 0.145
4 0.196 0.049 0.343 0.027 0.586 0.146
5 0.159 0.046 0.320 0.028 0.511 0.146
6 0.221 0.052 0.327 0.027 0.616 0.145
7 0.218 0.048 0.210 0.025 0.652 0.145
8 0.165 0.044 0.313 0.027 0.550 0.146
9 0.196 0.045 0.207 0.024 0.638 0.145
10 0.189 0.050 0.303 0.029 0.549 0.146
11 0.234 0.055 0.323 0.028 0.616 0.145
12 0.202 0.045 0.237 0.024 0.651 0.145
13 0.211 0.051 0.293 0.028 0.597 0.145
14 0.232 0.055 0.377 0.027 0.618 0.145
15 0.187 0.045 0.127 0.026 0.602 0.145
16 0.078 0.031 0.323 0.026 0.368 0.148
17 0.235 0.057 0.400 0.029 0.599 0.145
18 0.148 0.039 0.173 0.026 0.549 0.146
19 0.248 0.053 0.200 0.026 0.671 0.145
20 0.194 0.045 0.290 0.028 0.625 0.145
21 0.236 0.055 0.187 0.025 0.627 0.145
22 0.177 0.044 0.377 0.027 0.585 0.146
23 0.140 0.036 0.230 0.026 0.574 0.146
24 0.184 0.050 0.187 0.024 0.542 0.146
25 0.174 0.045 0.370 0.029 0.559 0.146
26 0.154 0.043 0.347 0.027 0.527 0.146
27 0.202 0.055 0.287 0.027 0.540 0.146
28 0.196 0.047 0.423 0.030 0.600 0.145
29 0.197 0.045 0.297 0.026 0.633 0.145
30 0.239 0.056 0.233 0.025 0.620 0.145
Min 0.078 0.031 0.127 0.024 0.527 0.145
Max 0.247 0.057 0.423 0.030 0.651 0.146
Average 0.193 0.048 0.283 0.027 0.585 0.146

 

Table 5. Estimate of genetic variance, genetic × environment interaction variance, heritability, and their standard error for a population size of 200 half-sib progenies.

  Population size — 200 half-sib progeny
Sample σ2G SEσ2G σ2GXE SEσ2GXE h2 SEh2
1 0.196 0.032 0.147 0.025 0.627 0.103
2 0.229 0.038 0.307 0.027 0.626 0.103
3 0.216 0.034 0.240 0.025 0.653 0.103
4 0.222 0.036 0.247 0.026 0.644 0.103
5 0.235 0.041 0.333 0.029 0.597 0.103
6 0.205 0.034 0.243 0.026 0.613 0.103
7 0.251 0.040 0.240 0.027 0.649 0.103
8 0.220 0.036 0.290 0.026 0.623 0.103
9 0.256 0.038 0.200 0.025 0.684 0.103
10 0.221 0.036 0.253 0.027 0.626 0.103
11 0.235 0.038 0.290 0.027 0.630 0.103
12 0.248 0.038 0.293 0.026 0.666 0.103
13 0.196 0.035 0.347 0.027 0.577 0.104
14 0.263 0.040 0.217 0.026 0.678 0.103
15 0.252 0.039 0.203 0.026 0.672 0.103
16 0.232 0.038 0.253 0.027 0.636 0.103
17 0.257 0.040 0.247 0.027 0.662 0.103
18 0.211 0.034 0.237 0.025 0.637 0.103
19 0.196 0.034 0.293 0.027 0.591 0.103
20 0.181 0.031 0.227 0.025 0.602 0.103
21 0.240 0.040 0.293 0.028 0.618 0.103
22 0.242 0.039 0.317 0.027 0.642 0.103
23 0.253 0.040 0.263 0.027 0.653 0.103
24 0.217 0.036 0.297 0.026 0.621 0.103
25 0.274 0.042 0.273 0.026 0.675 0.103
26 0.257 0.040 0.267 0.027 0.653 0.103
27 0.228 0.035 0.177 0.025 0.662 0.103
28 0.267 0.040 0.207 0.025 0.690 0.102
29 0.245 0.039 0.270 0.027 0.645 0.103
30 0.247 0.039 0.267 0.026 0.656 0.103
Min 0.181 0.031 0.147 0.025 0.591 0.102
Max 0.274 0.042 0.347 0.029 0.690 0.103
Average 0.227 0.037 0.257 0.026 0.630 0.103

 

Table 6. Estimate of genetic variance, genetic × environment interaction variance, heritability, and their standard error for a population size of 300 half-sib progenies.

  Population size — 300 half-sib progeny
Sample σ2G SEσ2G σ2GXE SEσ2GXE h2 SEh2
1 0.204 0.028 0.267 0.026 0.609 0.084
2 0.156 0.024 0.287 0.026 0.562 0.085
3 0.210 0.030 0.273 0.027 0.599 0.085
4 0.267 0.034 0.250 0.027 0.666 0.084
5 0.246 0.032 0.273 0.026 0.655 0.084
6 0.240 0.032 0.343 0.027 0.627 0.084
7 0.224 0.030 0.323 0.026 0.632 0.084
8 0.252 0.032 0.220 0.026 0.668 0.084
9 0.248 0.032 0.290 0.026 0.654 0.084
10 0.204 0.028 0.290 0.026 0.608 0.084
11 0.269 0.034 0.270 0.027 0.658 0.084
12 0.261 0.033 0.210 0.026 0.674 0.084
13 0.217 0.029 0.227 0.026 0.632 0.084
14 0.260 0.033 0.263 0.027 0.659 0.084
15 0.208 0.028 0.243 0.026 0.618 0.084
16 0.216 0.029 0.267 0.026 0.635 0.084
17 0.207 0.029 0.267 0.027 0.607 0.085
18 0.251 0.033 0.267 0.027 0.644 0.084
19 0.243 0.032 0.257 0.027 0.647 0.084
20 0.232 0.031 0.323 0.026 0.636 0.084
21 0.268 0.034 0.323 0.027 0.656 0.084
22 0.232 0.031 0.273 0.026 0.637 0.084
23 0.232 0.030 0.247 0.026 0.653 0.084
24 0.254 0.033 0.287 0.026 0.657 0.084
25 0.227 0.029 0.227 0.026 0.650 0.084
26 0.195 0.028 0.287 0.026 0.595 0.085
27 0.202 0.028 0.230 0.026 0.619 0.084
28 0.259 0.034 0.277 0.027 0.650 0.084
29 0.204 0.028 0.230 0.026 0.624 0.084
30 0.282 0.035 0.280 0.027 0.668 0.084
Min 0.156 0.024 0.210 0.026 0.562 0.084
Max 0.281 0.035 0.343 0.027 0.674 0.084
Average 0.232 0.031 0.269 0.026 0.637 0.084

 

Table 7. Estimate of genetic variance, genetic × environment interaction variance, heritability, and their standard error for a population size of 500 half-sib progenies

  Population size — 500 half-sib progeny
Sample σ2G SEσ2G σ2GXE SEσ2GXE h2 SEh2
1 0.203 0.022 0.263 0.026 0.647 0.066