Community IBM (cIBM2004) Maps.
Map score data for the
community IBM maps were supplied
by various cooperators (Table 1) and is based on the IBM-94 panel of 94 stocks.
These ines are a subset of the
high resolution IBM-302 mapping population used to anchor the physical map(Cone
et 2002. Plant
Physiol 130:1686-1696). The IBM
recombinant inbreds were developed from the Syn 5 generation , following 4
inter-matings of B73xMo17 (Lee, M et al. 2002 Plant
Mol Biol 48:453-461). Seed for the IBM-94 (Table 2) is distributed by
the Maize Genetic Cooperation Stock Center <http://maizegdb.org/cgi-bin/stockcatalog.cgi?id=1> . DNA samples of the
IBM-94 and the parent lines, along with protocols, are distributed at the
University of Missouri-Columbia
(<http://www.maizemap.org/dna_kits.htm>.
Map score data submitted over the web <http://www.maizemap.org/CIMDE/cimde.html
> will return map results
within a week after submission; loci
are placed based on a framework of 250 loci also mapped on the high resolution IBM maps. Each new marker is assigned to chromosome and mapped on the
individual chromosomes using the build and place commands of Mapmaker.
With permission of
individual cooperators, the community map will be published annually to
MaizeGDB. Loci submitted to MaizeGDB are vetted, in
consultation with the contributors,
for nomenclature, and probe details , including relationships of probes
to physical map probes. The first community
map was provided to MaizeGDB Dec 2003 and is called cIBM2003. Information about
associations to the physical map are additionally provided to Cari Soderlund, via the IBM neighbors (Polacco, M
et al 2004 Plant and Animal Genomes XII Conference, Maize Workshop < http://63.141.253.172/12/abstracts/W34_PAG12_159.html>
for inclusion in the maize FPC product < http://www.genome.arizona.edu/fpc/maize/> and to the Maize Mapping Project iMap representation <http://www.maizemap.org/imap.htm>.
Table 1
Cooperators providing raw map data include:
Ivan Acosta, Yale University, New Haven, CT: hlm2, tip1
Hank Bass, University of Georgia, Athens, GA: fsu1b(smh2),
smh1.
Tom Brutnell, Cornell University, Ithaca, NY(<http://bti.cornell.edu/Brutnell_lab2/Projects/Tagging/BMGG_pro_tagging.html>
: bti00191a::Ac, bti00191b::Ac, bti03525::Ac, bti03526::Ac, bti03545::Ac,
bti03557::Ac, bti03616::Ac, bti03702::Ac, bti03811::Ac, bti31132a::Ac,
bti31132b::Ac, bti31192::Ac, bti99224::Ac, btilc175::Ac, mon00004::Ac,
mon00030::Ac, mon00038::Ac, mon00044::Ac, mon00060::Ac, mon00072::Ac,
mon00084::Ac, mon00088::Ac, mon00092::Ac, mon00106::Ac, mon00108::Ac,
mon00122::Ac, mon00128::Ac, mon00150::Ac, mon00152::Ac, mon00178::Ac,
mon00186::Ac, mon00192::Ac, mon00200::Ac, mon00218::Ac, mon00236::Ac,
mon03068::Ac, mon03077::Ac, mon03078::Ac, mon03080::Ac.
ChromDB <http://www.chromdb.org> , University of Arizona, Tucson,
AZ ). Chromatin RFLP: ago108,
bnlg182, brd101, brd102, brd103, chb101a, chb101b, chb102, chc101a, chc101b,
chr106a, chr106b, chr109a, chr109b, chr110a, chr110b, chr111, chr112a, chr112b,
chr113, chr116a, chr116b, chr117a, chr117b, chr117c, chr117d, chr118, chr118,
chr119, chr120, chr122, chr124, chr125a, chr125b, chr126a, chr126b, crd101,
dmt101, dmt102a, dmt102b, dmt103a, dmt103b, dmt103c, epl101, fie2, gta105,
gta106b, gta107a, gta107b, gtb101, gtc101, gtc102, gtd101, gte101, gte102,
hac101a, hac101b, haf101, hag101, hag102, hag103a, hag103b, hag105, hda102,
hda108, hda109, hda110, hdt102, hdt103, hdt105, hmga101, hon104a, hon104b,
hon105, hon106a, hon106b, hon107a, hon107b, hon110, hxa102a, hxa102b, mbd101a,
mbd101b, mbd105, mbd106, mbd108, mbd109, mbd116, mbd119, mbd121, mez1, nfa101,
nfa102a, nfa102b, nfa104, nfc101, nfc103a, nfc103b, nfc104a, nfc104b, nfc104c,
nfc105, nfd101a, nfd101b, nfd102, nfd104a, nfd104c, nfd104d, nfd104e, nfd105,
nfd106, nfd107, nfd108, nfd109, nfd110, nfd114, nfe101, sdg101, sdg102a,
sdg102b, sdg102c, sdg104, sdg105a, sdg106, sdg107, sdg108a, sdg108b, sdg110,
sdg111a, sdg113, sdg115, sdg116a, sdg116b, sdg117a, sdg117b, sdg118, sdg119,
sdg123, sdg129, sgb101, sgb103, sgf101, smh4, vef101a, vef101b.
Genoplante, France ( <http://genoplante-info.infobiogen.fr>. RFLP related to Overgos on the physical
map: gpm1, gpm10, gpm11, gpm12, gpm13, gpm14, gpm15, gpm16, gpm2, gpm3,
gpm4, gpm5, gpm6, gpm7, gpm8, gpm9
Peter Rogowsky, EDP ENS-Lyon, Lyon France: ensl015, ensl016.
Mike McMullen, USDA-ARS Columbia, MO. SNPs related to Overgos
on the Physical map: AI714808, AI737325, AI861369, AW036917, AW172071,
AW231791, AW258116, AY103622, AY103942, AY103944, AY104188, AY104234, AY104686,
AY105043, AY105132, AY105205, AY105451, AY105479, AY105872, AY106026, AY106137,
AY106170, AY106313, AY106318, AY106439, AY106518, AY106592, AY106674, AY106825,
AY107012, AY107018, AY107034, AY107053, AY107079, AY107121, AY107128, AY107193,
AY107200, AY107292, AY107329, AY107414, AY107489, AY107496, AY107517, AY107629,
AY107682, AY107743, AY107844, AY107881, AY107910, AY107911, AY108545, AY108825,
AY108844, AY109061, AY109096, AY109128, AY109538, AY109804, AY110113, AY110240,
AY110782, AY110827, AY110835, AY110853, AY111089, AY111254, AY111333, AY111822,
AY111877, AY111962, AY112119, AY112175, AY112199, AY112283, AY112355, BE518809,
BG266188
Sahtoh Namiko, Cold Spring Harbor Laboratory, Cold Spring
Harbor, NY: shpl1.
Wolfgang Werr, Roman
Zimmerman Institut f�r
Entwicklungsbiologie,Universtaat K�ln, K�ln Germany: nact11, nact12,
nact15, nact16a, ns1
Table 2. The IBM-94
panel includes the below lines:
MO001 MO005
MO007 MO008 MO010 MO012 MO014 MO015 MO016 MO017 MO021 MO022 MO023 MO024 MO025
MO027 MO028 MO029 MO030 MO031 MO032 MO033 MO034 MO035 MO039 MO040 MO043 MO044
MO045 MO046 MO048 MO051 MO052 MO054 MO055 MO057 MO058 MO060 MO061 MO062 MO063
NO066 MO067 MO074 MO075 MO076 MO077 MO079 MO262 MO264 MO265 MO266 MO267 MO269
MO272 MO275 MO276 MO281 MO284 MO287 MO288 MO296 MO297 MO298 MO309 MO310 MO311
MO315 MO317 MO321 MO322 MO323 MO325 MO326 MO328 MO337 MO341 MO344 MO345 MO346
MO352 MO354 MO355 MO357 MO360 MO364 MO365 MO368 MO369 MO378 MO379 MO382 MO383
MO384
These line
numbers are identical to the corresponding line in the larger panel of stocks,
IBM 302, where seed are also maintained at the Stock Center.
Acknowledgements. This report would not have been possible without
the considerable contribution s of
Karen Cone, Mike McMullen, Georgia Davis , Seth Haverman and Hector
Sanchez-Villeda towards the design
and implementation of the CIMDE (Community IBM map data entry) software
package (Sanchez-Villeda et al
2003 Bioinformatics 19:2022-2030) and the encouragement of Ed Coe, PI of the Maize
Mapping Project, NSF DBI 9872655 that funded the software resources used
for these maps.
Maps Legend.
Bin edges are indicated
to left of each chromosome; asteriks
indicate a core marker.
Positions of off-frame loci are indicated as an interval value, in parentheses,
and refer to the interval �down� f rom the framework locus to their immediate
left. Note, due to the inter-matings in this population, these are not true
centiMorgan (cM) units defined in the classical sense.
Submitted by
Mary Polacco
USDA-ARS
University of Missouri
|
|
|
cIBM2004 CHROMOSOME1 |
|
|
|
|
|
|
|
BIN |
Position |
Locus |
Locus Off Frame |
|
1.00 |
0 |
umc157 |
|
|
|
43.7 |
umc1354 |
|
|
1.01 |
46 |
tub1 |
|
|
|
50.6 |
dmt103b |
|
|
|
54.2 |
umc1566 |
(17.4)mon03077::Ac |
|
|
87.9 |
lim179 |
(7.7)AY107629 |
|
|
111.8 |
umc1977 |
|
|
1.02* |
123.4 |
AY110853 |
|
|
|
146.7 |
csu1171 |
|
|
|
175.2 |
bnlg1953 |
(2.3)mon03080::Ac |
|
|
221.2 |
mon00192::Ac,
mon00106::Ac |
|
|
1.03 |
221.3 |
um76a |
|
|
|
226.5 |
umc1403 |
|
|
|
274.7 |
AY106592 |
|
|
|
283.6 |
asg35b |
|
|
|
294.6 |
AY110240 |
|
|
|
297.7 |
AY107489 |
(4.8)bnlg182 |
|
|
303.1 |
umc1598 |
|
|
|
315.1 |
mmp100 |
|
|
1.04* |
336.3 |
umc1169 |
(0.6)chr125b |
|
|
350.8 |
bnl9.11b |
(3.1)AY103942 |
|
1.05 |
365.2 |
csu3 |
(5.5)btilc175::Ac |
|
|
379.6 |
umc1515 |
|
|
|
382.7 |
nfd104c |
|
|
|
386.7 |
AY106439 |
|
|
|
387.8 |
AY107682 |
|
|
|
399.3 |
hac101b |
|
|
1.06* |
408 |
mbd106 |
|
|
|
410.4 |
umc1972 |
(1.1)gmp4 |
|
|
426.1 |
mbd119 |
|
|
|
432.9 |
asg58 |
|
|
|
444.7 |
nact15 |
|
|
|
467.8 |
ntf1 |
|
|
|
489.1 |
umc1925, asg62 |
(56.1)mon00186::Ac |
|
1.07 |
489.7 |
asg62 |
|
|
|
551 |
bnlg1556 |
|
|
|
560.9 |
dmt103c |
|
|
|
578.5 |
hon105 |
(8.7)bti03557::Ac |
|
|
588 |
bnlg1025 |
|
|
1.08 |
601.7 |
umc128 |
(0.6)AY105132 |
|
|
608.8 |
bnlg2228 |
|
|
|
611.3 |
chr124 |
|
|
|
614.9 |
bti03545::Ac |
|
|
|
618 |
sdg123 |
|
|
|
627.1 |
umc1991 |
|
|
|
646.8 |
nfc103a |
|
|
1.09 |
651.7 |
cdj2 |
(3.7)AY106137 |
|
|
666.4 |
umc2047 |
|
|
|
680.3 |
AY112283 |
|
|
1.10 |
685 |
umc107a |
|
|
|
691.4 |
chb101b, chr106a |
|
|
|
691.5 |
nfa103a |
|
|
|
696.8 |
AY104234 |
|
|
|
701.2 |
hxa102b |
|
|
|
703.1 |
vef101b |
|
|
1.11* |
712.2 |
lim39 |
(21.7)mon00200::Ac |
|
|
737.3 |
umc1421 |
(2.7)hon110 |
|
|
754.8 |
AY109096 |
|
|
|
767.6 |
AY106825, umc1630 |
|
|
|
771.2 |
AY112175 |
|
|
|
782.1 |
AY109128 |
|
|
|
812.9 |
phi064 |
|
|
1.12 |
831.3 |
bnl6.32 |
|
|
|
833.2 |
umc1605 |
|
|
|
842.3 |
AY104686 |
|
|
|
|
cIBM2004 CHROMOSOME 2 |
|
|
|
|
|
|
|
BIN |
Position |
Locus |
Locus Off Frame |
|
2.00 |
0 |
isu53a |
|
|
2.01* |
22 |
umc1165,
bti00191a::Ac |
(42.1)sgb101 |
|
2.02* |
64.7 |
umc1824a |
|
|
|
78.4 |
dmt102b |
|
|
|
84.2 |
eks1 |
(22.0)gmp7 |
|
2.03 |
110.1 |
umc6a |
|
|
|
128.3 |
nfd102 |
|
|
|
139.4 |
mmp33 |
|
|
|
152.2 |
sdg104 |
|
|
|
157.1 |
AY107034 |
|
|
|
159.8 |
sdg107 |
|
|
2.04* |
161.3 |
phi109642 |
|
|
|
169.2 |
AY103944 |
|
|
|
172 |
umc1326 |
|
|
|
174.3 |
hag103a |
|
|
|
192.1 |
AI714808 |
(4.9)bti03811 |
|
|
197.4 |
umc2030 |
(1.0)sdg102a |
|
|
200 |
hda102 |
(0.9)AY112119 |
|
2.05 |
206.1 |
umc131 |
|
|
|
207.4 |
zpu1 |
(0.4)AY107012 |
|
|
212.6 |
ns1 |
|
|
|
214.6 |
AY111877 |
|
|
2.06* |
217.3 |
pbf1 |
|
|
|
226.9 |
umc1080 |
(0.5)sdg119 |
|
2.07* |
238.9 |
umc2129 |
(3.1)AI861369 |
|
|
244 |
umc1890 |
|
|
|
255.7 |
nfc104b |
|
|
|
259.4 |
sdg106, nfd101b |
(11.7)chr119,(9.7)sdg116b |
|
|
271.8 |
umc1560 |
|
|
2.08 |
274.7 |
asg20 |
|
|
|
286.8 |
mon00084::Ac |
|
|
|
296.4 |
hda109, chr122 |
|
|
|
303.1 |
umc1604 |
|
|
|
308 |
hag105 |
|
|
|
312.4 |
chc101b |
|
|
|
326 |
mmc0381 |
|
|
|
336.2 |
gmp16 |
|
|
2.09 |
346 |
umc49a |
|
|
|
355.3 |
umc1252 |
|
|
|
380.9 |
BG266188 |
|
|
|
401.4 |
bnlg469b |
|
|
2.10* |
437.1 |
AY106674 |
|
|
|
446.7 |
lim104 |
(0.9)chr106b |
|
|
452.4 |
umc1696 |
|
|
|
|
cIBM2004 CHROMOSOME 3 |
|
|
|
|
|
|
|
|
|
BIN |
Position |
Locus |
Locus Off Frame |
|
|
3.01* |
0 |
umc1931 |
|
|
|
|
4.4 |
bnl8.15 |
()AY106313 |
|
|
|
17.9 |
AY112199 |
|
|
|
|
20.5 |
umc2049 |
|
|
|
3.02 |
40.1 |
csu32a |
|
|
|
|
58.7 |
umc1886 |
|
|
|
3.03 |
86.1 |
asg24a |
|
|
|
|
104.7 |
lim66 |
|
|
|
3.04 |
124.5 |
asg48 |
|
|
|
|
137.4 |
umc1608 |
|
|
|
|
147.7 |
nfc104c |
(2.3)haf101,(12.6)AY107193 |
|
|
|
160.9 |
mmc0132 |
(3.8)chr126b,
(3.4)bti03702::Ac |
|
|
|
169.7 |
umc1449 |
(4.8)mbd105,(4.6)chr110a,(4.5)AY111333 |
|
|
|
176.3 |
hac101a |
|
|
|
|
179.9 |
AY110827, gmp14 |
|
|
|
3.05 |
184.4 |
umc102 |
(7.6)bti03526::Ac |
|
|
|
190.7 |
chr109b, umc1102 |
(35.1)mon00178::Ac,(0.5)nact16a |
|
|
|
227.9 |
csu636 |
|
|
|
3.06* |
236.5 |
umc1539 |
|
|
|
|
249.9 |
asg39 |
|
|
|
|
251.9 |
AY106026 |
|
|
|
|
309.4 |
csu1183 |
|
|
|
|
314.4 |
sdg113 |
|
|
|
|
320.4 |
bti31083::Ac |
|
|
|
|
330.9 |
asg7b |
|
|
|
3.07 |
333.2 |
bnl6.16a |
|
|
|
|
348.2 |
AY107018 |
|
|
|
|
369.4 |
umc1404 |
|
|
|
|
377 |
sdg117a |
|
|
|
|
378.8 |
nfc101, nfc105 |
|
|
|
|
380.6 |
hon108 |
|
|
|
|
382.3 |
AY106518 |
|
|
|
3.08 |
387.2 |
umc17a |
|
|
|
|
389 |
AW258116 |
|
|
|
|
403.5 |
gmp3 |
|
|
|
|
408.7 |
mmc0251 |
(12.7)sdg115 |
|
|
|
424 |
umc1273 |
|
|
|
3.09 |
428.6 |
umc63a |
|
|
|
|
436.7 |
csu845 |
(13.5)AY111254 |
|
|
|
476.5 |
lim182 |
|
|
|
|
491.1 |
bnlg1754, fsu1b |
|
|
|
|
527.2 |
umc1641 |
|
|
|
|
532.4 |
bti03616::Ac |
|
|
|
|
538.3 |
umc1594 |
|
|
|
|
|
|
|
|
|
|
|
cIBM2004 CHROMOSOME 4 |
|
|
|
|
|
|
|
|
|
BIN |
Position |
Locus |
Locus Off Frame |
|
|
4.01* |
0 |
msf1 |
|
|
|
|
20.8 |
bx4 |
|
|
|
|
43.1 |
umc1759 |
|
|
|
4.02 |
45.6 |
php20725a |
|
|
|
|
67.4 |
umc1943 |
|
|
|
4.03 |
104.8 |
umc31a |
(1.5)chr117c |
|
|
|
116.6 |
umc1926 |
|
|
|
|
147.6 |
umc2039 |
|
|
|
|
212.5 |
bnl8.45c |
|
|
|
4.04* |
280 |
bnlg490 |
|
|
|
4.05* |
286.1 |
sdg108a |
|
|
|
|
292.1 |
AY107128 |
|
|
|
|
301.5 |
csu509 |
|
|
|
|
307.9 |
chr112a, hda108 |
|
|
|
|
310.8 |
umc1511 |
|
|
|
|
313.1 |
nfa104 |
|
|
|
|
314.8 |
nfd104e |
(0.5)AY105043 |
|
|
4.06* |
321 |
umc1945 |
|
|
|
|
335.7 |
nfd105 |
|
|
|
|
344 |
mpik3 |
|
|
|
4.07 |
371.4 |
bti31094::Ac, umc66a |
|
|
|
|
377.2 |
umc2038 |
|
|
|
|
380.4 |
mon00128::Ac |
|
|
|
|
382.9 |
mon03078::Ac |
|
|
|
|
387.1 |
bnl5.24b |
|
|
|
|
397.4 |
bti00207::Ac |
|
|
|
4.08* |
398.7 |
umc1775 |
|
|
|
|
409.4 |
umc1808 |
|
|
|
|
448.9 |
ufg23 |
(13.7)nfd106,
(12.8)bti00245::Ac |
|
|
|
463.1 |
umc1842 |
(1.0)mbd121,
(1.9)mon00150::Ac |
|
|
4.09 |
468.2 |
umc52 |
(6.5)AY111962 |
|
|
|
475.9 |
umc1999 |
(2.1)nfd107 |
|
|
|
492.4 |
AY107200 |
(7.4)chb102 |
|
|
|
501.4 |
mbd116 |
(14.5)bti31192::Ac |
|
|
|
517.6 |
sbp2 |
(4.4)AY107910 |
|
|
4.10 |
530.4 |
php20608a |
|
|
|
|
547.8 |
umc1109 |
(15.2)AY111822 |
|
|
|
563.6 |
hon106b |
|
|
|
|
574.2 |
bip2 |
|
|
|
|
577.9 |
umc1707 |
|
|
|
|
|
|
|
|
|
|
cIBM2004 CHROMOSOME 5 |
|
|
|
|
|
|
|
BIN |
Position |
Locus |
Locus Off Frame |
|
5.00 |
0 |
umc1253 |
|
|
|
21.4 |
tip1, umc1260 |
|
|
5.01 |
23.2 |
npi409 |
|
|
|
31.5 |
lim407 |
|
|
|
61.2 |
umc2036 |
(4.0)hxa102a |
|
5.02* |
85.9 |
asg73 |
|
|
|
90.5 |
chb101a |
|
|
|
94 |
umc1587 |
(23.4)ago108,(23.3)AY110835 |
|
5.03* |
119 |
bnlg1879 |
|
|
|
133 |
rz474a |
(1.2)mbd109 |
|
|
138.3 |
nfc103b |
|
|
|
150 |
umc2035 |
|
|
|
158.8 |
hag101 |
|
|
|
165.7 |
crd101 |
|
|
|
168.8 |
gmp5 |
|
|
|
173 |
umc1609 |
|
|
|
178.3 |
AY107414 |
|
|
|
182.2 |
shpl1 |
|
|
|
187.1 |
sdg129, AY107844 |
|
|
|
187.2 |
gtc101, gtc102 |
|
|
|
188.3 |
hon106a |
|
|
|
190.7 |
bnlg1902 |
|
|
5.04* |
199.3 |
mon00030::Ac |
(2.8)nfd108 |
|
|
203.7 |
umc1990 |
|
|
|
218.4 |
AY105205 |
|
|
|
225.7 |
umc1349 |
|
|
|
233.3 |
mon00152::Ac |
|
|
5.05* |
242.3 |
umc1482 |
|
|
|
252.7 |
nfe101 |
(15.0)AY107329,(13.5)AY111089 |
|
|
269.7 |
nbp35 |
(0.6)gte102 |
|
|
281.8 |
mon00044::Ac |
|
|
5.06 |
290 |
umc126a |
|
|
|
299.7 |
nfd104a |
|
|
|
316 |
bnlg609 |
|
|
|
326.7 |
sdg117b |
|
|
5.07 |
347.1 |
umc108 |
|
|
|
397.9 |
bnlg1118 |
|
|
|
412.3 |
bnlg118 |
|
|
5.08* |
443.5 |
umc1225 |
|
|
|
445.2 |
mmp175 |
|
|
|
454.4 |
nfd109 |
|
|
5.09 |
463.3 |
php10017 |
|
|
|
|
|
|
|
|
|
|
cIBM2004 CHROMOSOME 6 |
|
|
|
|
|
|
|
|
|
BIN |
Position |
Locus |
Locus Off Frame |
|
|
6.00 |
0 |
umc1143 |
|
|
|
6.01 |
19.9 |
hon104b, umc85a |
sdg102b |
|
|
|
27.1 |
bnlg1867 |
(1.5)gmp8 |
|
|
|
31.1 |
nfa101 |
(0.6)mez1,(0.5)mon00038::Ac |
|
|
|
32.3 |
AY107121 |
|
|
|
6.02* |
36.1 |
umc1006 |
|
|
|
|
40.7 |
sdg102c |
|
|
|
|
49.5 |
csu923 |
|
|
|
6.04 |
61 |
umc65a |
|
|
|
|
75.6 |
umc1857 |
(1.5)nact11,(1.2)AY108825,(1.8)AY109804 |
|
|
|
78.5 |
sgf101 |
|
|
|
|
85.6 |
gta107b, gta105 |
|
|
|
|
90.5 |
bti31132a::Ac,
bti31132b::Ac |
|
|
|
|
103.3 |
umc2006 |
(7.8)AY107053 |
|
|
6.05* |
111.7 |
isu111a |
|
|
|
|
114.8 |
AY105479 |
(0.7)AY107517 |
|
|
|
116.9 |
chr117d |
|
|
|
|
121.4 |
uaz280c |
|
|
|
|
130.6 |
umc1388 |
|
|
|
|
143.6 |
pmg1 |
(1.5)mbd101b |
|
|
|
152.4 |
chr116a, AY107881 |
|
|
|
|
169.6 |
AW036917 |
|
|
|
|
192.5 |
uaz121a |
|
|
|
|
199.4 |
gmp9 |
|
|
|
6.06 |
213.3 |
umc38a |
|
|
|
|
216.3 |
umc1762 |
|
|
|
|
218 |
sdg111a, gtb101 |
|
|
|
|
231.3 |
lim379 |
|
|
|
|
236.6 |
lim151 |
(0.9)gte101 |
|
|
6.07 |
257 |
umc132a |
(0.7)hdt103 |
|
|
|
260.2 |
nfa102a |
|
|
|
|
265.5 |
mlg3 |
|
|
|
|
309.1 |
umc1350 |
(35.3)chr118,(35.3)chr121 |
|
|
6.08* |
346.2 |
umc2059 |
|
|
|
|
|
|
|
|
|
|
|
cIBM2004 CHROMOSOME 7 |
|
|
|
|
|
|
|
BIN |
Position |
Locus |
Locus Off Frame |
|
7.00 |
0 |
csu582 |
|
|
|
42.8 |
umc1378 |
(1.2)gmp12 |
|
|
63.9 |
umc1672 |
|
|
7.01 |
80.8 |
asg8 |
|
|
|
91.8 |
php20581a |
|
|
|
102.8 |
hda110 |
|
|
|
122 |
dmt101 |
|
|
|
123.7 |
o2, hon102 |
|
|
7.02 |
124.3 |
asg34a |
|
|
|
142.5 |
sdg101 |
|
|
|
150.4 |
cyp6 |
(0.6)AY109061 |
|
|
150.9 |
AY106170 |
|
|
|
152 |
epl101, vef101a |
|
|
|
153.1 |
hag102, sdg110 |
|
|
|
169.2 |
umc1983 |
|
|
|
185.5 |
mon03068::Ac |
|
|
|
194.6 |
bnlg1808 |
|
|
7.03* |
196.9 |
mmp127 |
|
|
|
233 |
bnlg1070 |
|
|
|
241.8 |
mbd108 |
|
|
|
243 |
brd103 |
(1.6)bti31211::Ac |
|
|
245.4 |
sdg116a |
|
|
|
247.7 |
mon00072::Ac |
|
|
|
254.9 |
umc56 |
|
|
|
261.3 |
brd101, nfd101a |
(3.2)AY107911 |
|
|
279.8 |
tif1 |
|
|
7.04* |
290.2 |
umc1710 |
|
|
|
313.2 |
bnlg1666 |
|
|
|
320.8 |
chr111 |
|
|
|
342.9 |
mon00088::Ac |
|
|
|
345.7 |
umc1708 |
|
|
|
355.6 |
AY108844 |
|
|
|
368.5 |
mon00060::Ac |
|
|
|
381 |
umc1412 |
|
|
|
389 |
gmp2 |
|
|
7.05 |
395.9 |
umc245 |
(7.0)chc101a |
|
|
405.4 |
phi069 |
(6.0)AY106318 |
|
|
449.3 |
umc1406 |
|
|
7.06 |
455.3 |
umc168 |
|
|
|
459.7 |
nfc104a |
|
|
|
|
|
|
|
|
|
cIBM2004 CHROMOSOME 8 |
|
|
|
|
|
|
|
BIN |
Position |
Locus |
Locus Off Frame |
|
8.01 |
0 |
npi220a |
|
|
|
9.3 |
csu319 |
|
|
|
35 |
umc1592 |
|
|
|
57.9 |
umc1327 |
|
|
|
76.4 |
mmp85 |
|
|
8.02* |
82 |
hon107b |
|
|
|
83.9 |
gmp11 |
|
|
|
86.6 |
cdo460 |
|
|
|
107.3 |
mmp166 |
|
|
|
111.1 |
chr117a |
|
|
|
126.8 |
AI737325 |
|
|
|
143.8 |
nfd110, nfd114 |
|
|
|
143.9 |
umc124a |
|
|
|
145.6 |
umc1530 |
|
|
|
166.5 |
gmp10, AY110113 |
|
|
8.03 |
166.6 |
chr110b, chr126a |
|
|
|
169.4 |
bti03525::Ac |
|
|
|
174.5 |
umc1910 |
|
|
|
180.4 |
AW172071 |
|
|
|
197.9 |
umc1457 |
|
|
|
201.7 |
AY108545, mbd101a |
|
|
8.04* |
204.1 |
AW231791, AY107079 |
|
|
|
213.8 |
sdg105a |
|
|
8.05* |
216.1 |
umc1130 |
|
|
|
229.6 |
chr117b |
(6.1)nfa102b |
|
|
237.5 |
umc1889 |
(0.6)hdt102 |
|
|
242.2 |
chr112b |
|
|
|
242.8 |
hon107a |
|
|
|
243.4 |
fsu1a |
|
|
8.06* |
264.4 |
sdg118, umc1149 |
|
|
|
287.2 |
hdt105 |
|
|
|
294.4 |
chr116b |
|
|
|
300.1 |
bnlg1031 |
(18.8)mon00108::Ac |
|
8.07* |
328.3 |
umc1268 |
|
|
8.08 |
335.2 |
npi414a |
|
|
|
364.8 |
umc1933 |
(20.2)mon00122::Ac |
|
8.09 |
395.1 |
agrr21 |
|
|
|
469.4 |
bnlg1131 |
|
|
|
|
|
|
|
|
|
cIBM2004 CHROMOSOME 9 |
|
|
|
|
|
|
|
BIN |
Position |
Locus |
Locus Off Frame |
|
9.01 |
0 |
umc109 |
(9.6)AY112355 |
|
|
47.4 |
lim343 |
|
|
|
50.6 |
ufg41 |
|
|
|
54.8 |
gta106b, gta107a |
|
|
|
69.5 |
umc1967 |
|
|
|
71.2 |
AY107496 |
|
|
9.02 |
73.5 |
bz1 |
|
|
|
90.6 |
chr113 |
|
|
|
93.5 |
csu471 |
|
|
|
99 |
AY103622 |
|
|
|
118.4 |
bnlg1401 |
|
|
|
149.5 |
AY105451 |
|
|
9.03 |
159 |
wx1 |
|
|
|
160.9 |
mon00236 |
|
|
|
162.8 |
umc1258 |
(1.1)hon104a |
|
|
167.9 |
gmp6 |
|
|
|
174 |
chr120 |
|
|
|
175.3 |
nact12 |
(5.7)gtd101,(5.7)ensl015,(5.7)ensl016,(5.8)AY107743,(5.7)BE518809 |
|
|
181.9 |
umc1271 |
|
|
|
189.9 |
rz682 |
|
|
9.04* |
196.6 |
bnlg1209 |
|
|
|
208.2 |
AY110782 |
|
|
|
209.4 |
umc1120 |
|
|
9.05 |
215.7 |
umc95 |
|
|
|
218.6 |
chr125a |
|
|
|
225.7 |
mmp151d |
|
|
|
248.2 |
csu634 |
|
|
|
253.7 |
ufg24 |
|
|
9.06* |
269 |
gmp1, mmp142 |
|
|
|
293.5 |
AY107292 |
|
|
|
305.8 |
mmp131 |
(4.9)AY104188 |
|
|
313.7 |
mmp168 |
(3.4)nfd104d,(19.2)mon00004 |
|
9.07 |
333.5 |
asg12 |
|
|
|
346.3 |
bnlg619 |
|
|
|
359 |
brd102, mon00092 |
|
|
|
378.5 |
umc1137 |
(25.8)dmt103a |
|
|
408.6 |
umc1505 |
|
|
|
|
|
|
|
|
|
cIBM2004 CHROMOSOME 10 |
|
|
|
|
|
|
|
BIN |
Position |
Locus |
Locus Off Frame |
|
10.00 |
0 |
mmp48a |
|
|
|
10 |
php20753a |
|
|
10.01 |
14 |
php20075a |
|
|
|
39.5 |
umc2018 |
(2.1)bti99224::Ac |
|
10.02 |
48.5 |
npi285a |
|
|
|
76.1 |
umc2069 |
|
|
10.03 |
80.8 |
umc130 |
(8.9)chr109a,(4.5)AY105872 |
|
|
90.2 |
sdg108b |
|
|
|
92.9 |
umc1345 |
|
|
|
97.7 |
hlm2 |
|
|
|
100.8 |
gmp13, fie2 |
|
|
10.04 |
102.5 |
umc64a |
|
|
|
108.1 |
umc1995 |
|
|
|
116.1 |
AY109538 |
|
|
|
125.6 |
umc1330 |
|
|
|
131.6 |
hag103b |
|
|
10.05 |
136.3 |
umc259a |
|
|
|
148 |
umc1506 |
(28.1)gmp15 |
|
10.06* |
177.3 |
bnl10.13a |
|
|
|
187.9 |
bnl17.02 |
|
|
|
219.4 |
umc1993 |
(5.6)dmt102a |
|
10.07 |
245.2 |
bnl7.49a |
|
|
|
255 |
bnlg1677 |
(0.4)sgb103 |
|
|
311.2 |
bnlg1450 |
(33.7)mon00218::Ac |
|
|
315.8 |
bti00191b::Ac |
(0.4)sgb103 |
|
|
341.1 |
asg19b |
(33.7)mon00218::Ac |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|