Clone Identification by Sequence Similarity and Mapping Results

I. The lab designations for all clones with putative sequence identities are listed in the first column. Those with a designation of rsp, spf, or beginning with "2" or "5" were isolated from endosperm libraries. Those beginning with "6" originated from an etiolated seedling library. Those denoted "csu" were previously isolated from a mature vegetative tissue library (obtained from Stratagene) and sequenced by Chris Baysdorfer at California State University-Hayward; many have since been mapped at the University of Arizona.
II. In the second column, the GenBank accession number assigned to this sequence is reported when available.
III. In the third column, the most significant similarity found through comparison of our sequence with the GenBank database is reported. Comparison is examined at the amino acid similarity level by the subroutine BLASTX and if not successful in identifying a match, subsequently at the nucleic acid level by BLASTN. Strong similarities at the amino acid level are usually indicated by a BLASTX score of 180 or better. Weaker matches are usually indicated by a suffix of "homolog" in this field. Alternatively if protein motif similarities are determined through the use of the BLOCKS program, then the term "motifs" is usually added as a suffix in this section.
IV. In the fourth column, the highest BLASTX score is reported for the similarities detected (suffixed by "X"). If this score is preceded by ">", this indicates that multiple regions of similarity were detected which often reflect a much higher level of significance than indicated by the highest BLASTX score for individual blocks. If the score is followed by "N", this score represents a BLASTN score. Alternatively, "%" reflects the amount of identity between the two sequences.
V. In the fifth column, the accession numbers from GenBank, dbEST, PIR, or SwissProt of the closest match are reported. If the identity was established at the level of protein motifs through the use of the BLOCKS routine, this is indicated.
VI. In the sixth column, we report an indication from colony screening as to whether the sequence is abundantly (Abnd) or rarely expressed and if the former, in what tissues (S=seedling, E=endosperm).
VII. In the seventh column, an indication of the type of pattern in a Southern hybridization to maize genomic DNA is reported as being either a "Complex" pattern (more than three prominent fragments observed) or "Simple" (three or less).
VIII. In the eighth column are given the UAZ map designations for those clones which have been mapped recombinationally in the Brookhaven RI lines. Mnemonics are given for those clones which exhibit some extensive homology to an entry in GenBank. "gfu" refers to a clone that has been mapped but for which sequence information is not yet available or which did not detect any significant homology within GenBank..
IX. The last column reports the chromosomal locations detected by this mapping. Here we use the "Binning" as developed by the maize group at Missouri, to define chromosomal locations along each chromosome. Bins were assigned relative to the 1993-1994 University of Missouri-Columbia Maize RFLP map [ED. NOTE: Please see the 1995 UMC map - several bins and bin boundaries have been modified as a result of refinements in scoring and analysis].
The Maize cDNA Project is the result of a collaboration between groups at three institutions:

Tim Helentjaris and Coworkers Chris Baysdorfer and Coworkers Rob Ferl & Ernie Almira
Dept. of Plant Sciences Dept. of Biol. Sci., School of Science Interdisciplinary Ctr. for Biotechnol. Res.
University of Arizona California State University, Hayward DNA Sequencing Core
Tucson, AZ 85721 Hayward, CA 94542 University of Florida
ph. (602) 621-8746 ph.(510) 881-3459 P.O. Box 100695
fax -7186 fax -2035 Gainesville, FL 32611-0695
[email protected] [email protected] ph. (904) 392-1928, ext. 301
fax -4072
[email protected]

Clones with Significant Indications of Function through Sequence Analysis

			Similar Sequence
I* Clone Designation	II GenBank Access. #	III Putative Gene Product	IV Score	V Access #	VI Express. Pattern	VII Genomic Complexity	VIII Locus Name	IX Genomic Location
2C01H10 5C05F10 6C02G05	T18751 T15301 T18435	triosephosphate isomerase - maize	562X	A25501	Abnd/S	Complex	uaz93(tpi) uaz296(tpi)	2.04,3.04, 8.02-8.03
csu142	T12737	sugar transport protein homolog - yeast	96X	S30811		Simple	csu142(sut)	2c
rsp12,rsp64 5C04A07,5C04D10, 5C07G02,5C11D03	T14662 T14713 T23326 T25261	sucrose synthase - maize	564X	L01626	Abnd/E	Simple	uaz154(sh1)	9.02
5C01G05	T18269	glucosamine-fructose-6-phosphate aminotransferase	410X	P14742	Rare	Complex	uaz309(cht)	3.10,10.00
6C04B04,6C06C10	T15330	b-glucosidase - maize	662X	X74217	Abnd/S	Simple	uaz339(glu)	3.04,10.04
6C01G09	T20392	b-glucosidase - maize	85%	X74217	Abnd/S	Complex	uaz340(glu)	10.04,10.05-10.0 6
5C04B10	T14684	soluble starch synthase - rice	184X	D16202	Rare	Complex	uaz218(strs)	3.07,4.05-4.06
5C04H03 5C10A05	T18721 T25209	waxy gene- maize	1609N	X03935	Rare	?
5C04H06,5C06D08 5C10G07	T18724 T14743 T25240	ADPG pyrophosphorylase (sh2) - maize	520X	S48563	Abnd/E	-	-	1,3L,4,5
5C06E05 5C07B08	T18304 T18637	ADPG pyrophosphorylase (embryonic) - potato	664X	S18238	Rare	Complex	agp1	6.11
5C02H07 6C01B06,6C02D08	T14797 T20333 T18408	UDPG pyrophosphorylase - potato rice dbEST	546X 707N	P19595 D24990	Rare	Simple	uaz194(udp)	2.08
5C05F05	T15298	starch branching enzyme I - maize	587X	JT0968	Rare	Simple	uaz265 (sbe1)	2.06,6.02-6.03
5C03G08 5C09B11	T14653 T14654 T23384	starch branching enzyme 2 - maize	523X	L08065	Rare	Simple	uaz229 (sbe2)	3.02
rsp33		a-glucan phosphorylase - potato	361X	S15531	-
Rice10		fructose-biphosphate aldolase - rice	--	--	-	Simple	uaz291(fda)	8.08
5C07H03 5C08C04 5C11D06	T23335 T23349 T25264	alcohol dehydrogenase 1 - maize rice	230X 537N	A00342 X16296	Rare			1.11-1.12
csu149	T12742	short chain alcohol dehydrogenase (ts2 homolog)			-	Simple	csu149(sca	5.00
5C04A01	T14656	sorbitol dehydrogenase similarity - human	129X	Q00796	Rare	Simple	uaz152(sdh)	9.07-9.08
2C02D11 5C01C11, 5C01F03, 5C01H01, 5C02C11, 5C02E03, 5C04E09, 5C05F03, 5C09G12 5C10H04, 5C11A01 6C01H03, 6C02B05 csu140, csu152	T14755 T14761 T14789 T14727 T15296 T20366 T23281 T18391 T18686 T23408 T25245 T25250 M95076	glyceraldehyde-3-phosphate dehydrogenase - maize rice dbEST Arabidopsis dbEST	583X 1327N 1293N	PQ0178 D16096 M64116	Rare	Simple	uaz73(gpa) uaz190(gpa) uaz261(gpa) uaz271(gpa)	4.03-4.04,5.07
5C10H08	T25248	anthranilate synthase 1 - Arabidopsis	537X	JQ1684	Rare	?
csu65	M95067	anthranilate synthase 2 - yeast	58%	P00937	-	-
6C02A09	T18386	a-ketoglutarate dehydrogenase - yeast	>225X	P20967	Abnd/E	Simple	uaz215(odo)	5.02-5.03,5.09
5C03E12, 5C06C08, 5C06D11, 5C10G06	T18293 T18302 T23305 T25239	a-ketoglutarate dehydrogenase - human rice dbEST	>179X 820N	Q02218 D23067	Rare	Complex	?
5C04E05, 5C07D08, 5C07F11	T14721 T14722 T18645 T23324	monodehydroascorbate reductase - Cucumis	110X	D26932	Rare	Simple	uaz204(dar)	5.09
csu324		citrate synthase - pig	67%	M21197	-	-
5C01C07, 5C09B01 csu158	T14753 T23378	enolase - maize rice dbEST Arabidopsis dbEST	319X 784N 751N	X55981 D21305 T14216	Rare	Simple	csu158(eno1)	9.03
5C03H06, 5C05H04, 5C08G09	T15312 T23313 T23369	ketol-acid reductase isomerase - Arabidopsis rice dbEST	538X 355X	X68150 36767	Abnd/E	Complex	uaz269(kri)	2.07,6.01, 6.10,8.04
csu198	T18783	malate dehydrogenase - pig	69%	M29463	-	-
csu77	M95069	malate dehydrogenase - maize	61%	M95069	-	Simple	csu77(mdh)	1.10
csu16		NADP malic enzyme - maize	100%	J05130	-	Simple	csu16(me)	3.02,6
csu262	T18824	6-phosphoglucanate dehydrogenase - algae	66%	X58719	-	-
5C06D06, 5C09B06	T18298 T23382	pyruvate dehydrogenase E1 complex - human	316X	S13825	Rare	Simple	uaz301(pyrd)	1.08
5C04A04,5C04C06, 5C06G09, 5C07E01, 5C09B04, 5C09C05 5C11B03, csu155	T18315 T18678 T18648 T23380 T23390 T25252	pyruvate phosphate dikinase - maize	534X	M58656	Abnd/E	Simple	uaz127, uaz172, uaz183, uaz188, uaz196, uaz319 (pdk)	6.07,8.05
5C05D10, 5C09E04, 5C10C04	T15339 T23401 T25216	NADH-ubiquinone oxidoreductase - cow Arabidopsis dbEST	169X >77	P80266 14420	Rare	Complex	uaz266(nad)	1.04,9.05-9.06
6C02C04	T15328	catalase1 - maize	212X	P18122	Abnd /ES	Simple	uaz360 (cat1)	5.05
rsp27		catalase2 - maize	166N	X54819	-			1s
6C02C06, 6C06C07	T18399	catalase3 - maize	272X	L05934	Abnd/S	Simple	mitoch?	4L
6C02D10	T18410	peroxidase (lignin form enz) - rice	120X	S22087	Rare	Simple	uaz235(px)	2.06
csu182	T18842	superoxide dismutatase - maize	98%	X17564	-
6C02E12, 6C02F07 csu160	T18420 T18426 T12746	lipoxygenase L-2 - rice	159X	J03211	Abnd/S	Complex	uaz225(lox)	7.04
6C06B11	T15323	cytochrome P450 hydroxylase - S.melongena	143X	X70981	Abnd/S	Simple	uaz338 (p450)	7.01-7.02
csu25	T12664	cytochrome P450 similarity - rat	88X	P33274	-	Simple	csu25(p450)	3.10
5C05B02	T15273	thioredoxin - Arabidopsis rice dbEST	200X 175X	P29448 37996	Rare	Simple	?
csu111	T12723	glutathione reductase - pea	223X	P27456	-	-
csu44		glutathione-S-transferase - maize	100%	X04455	-	-
csu40	T12674	Glutaredoxin similarity - E. coli Arabidopsis dbEST	74% 298N	P00277 T13672	-	Simple
Rice12		glutamic dehydrogenase - rice	--		-	Complex	uaz292(gdh)	7.04
rsp13, rsp145 5C09H06	T23410	aspartate amino transferase - rice	410X	S18891	Rare	?
5C04B05, 5C07G11	T14674 T14675 T23332	alanine transaminase - millet	671X	S28429	Rare	Simple	uaz158(alt)	5.05
5C03D02	T23295	glutamate 1-semialdehyde aminotransferase rice dbEST	100X 530N	P30268 D24532	Abnd /ES	?
csu194	T18851	methionine synthase - E. coli	60%	M87625	-
6C01G01	T20390	S-adenosyl methionine synthase - rice	78%	Z26867	Abnd/S	Complex	?
5C01E09	T18260	adenosylmethion-8-amino-7-oxononanoate aminotransferase - bacteria	>167X	P22805	Rare	Complex	uaz113(aaa)	2.02-2.03, 10.08
5C01H11	T18277	s-adenosyl-l-homocysteine hydrolase rice dbEST Arabidopsis dbEST	539X 492X 195X	D16138 37567 14494	Rare	Simple	uaz145(ahh)	4.03-4.04
csu156	M95077	phenylalanine ammonia lyase - rice	91%	X16099	-	Complex	csu156(pal)	2s,4s,5L
5C01C04, 5C02C04, 5C08F11	T14750 T14778 T23368	peptidyl-prolyl c-t isomerase - maize rice dbEST	500X 1092N	P21569 D16134	Abnd/E	Simple	uaz238(ppi)	5.07
5C05G07, 5C06F04, 5C08A08, 5C11B04 6C01F05 fplo	T15306 T18307 T20387 T23340 T25253	protein disulfur isomerase - barley Arabidopsis dbEST rice dbEST	475X 217X 114X	L33252 34988 37958	Rare	Simple	uaz298(pdi) uaz239(pdi)	2.10,4.02
5C05C09, 5C10E02	T15280 T25224	hypothetical 42.8kd protein - yeast	221X	P32615	Rare	Complex	uaz295(orf)	2.05,3.03, 5.07
5C01E01 6C01B08	T18661 ?	ubiquitin precursor - maize rice dbEST	307X 848N	S04863 D25067	Abnd/E	Simple	uaz247(ubi)	4.11
5C08E11	T23365	ubiquitin precursor - sunflower Arabidopsis rice	310X 308X 305X	S17435 S01425 P50380	Rare	?
csu204	T18788	ubiquitin carrier protein - wheat	73%	M74077	-	-
2C06C11 5C02F11, 5C04D06 5C05D12, 5C07E09	T14794 T14707 T14708 T15289 T18767 T23320	ubiquitin-conjugating enzyme E2 - wheat	611X	P16577	Rare	Simple	uaz102(uce) uaz206(uce)	6.01
csu269 spf1, spf11		nucleoside diphosphate kinase - mouse	191X	M65037	-	Simple	uaz31(ndk) uaz10(ndk)	1.05
spf4		nucleoside diphosphate kinase - Spinacia	241X	S24165	-	Simple	uaz91(ndk)	7.04
csu269	T18831	nucleoside diphosphate kinase - rice	83%	D16292	-	-
5C10C03	T25215	Acyl-CoA binding protein - Brassica Arabidopsis dbEST rice dbEST	229X 483N 529N	X77134 T04081 D28303	Rare	?
2C02C10	T18756	acyl carrier protein - maize	170N	X57956	-	Simple	uaz6(acpt)	3.05
2C01H08	T18750	acyl carrier protein reductase - Cuphea Arabidopsis dbEST	>255X >112X	S19832 33679	-	Simple	uaz99(acpr)	10.04
5C02D03,5C02H03	T23282 T23286	colinephosphate cytidylyltransferase - rat Arabidopsis dbEST rice dbEST	107X 83X 103X	P19836 49925 D28176	Rare	?
csu265	T18827	cycloartenol synthase - Arabidopsis	66%	U025550	-	-
6C06C04	T15326	enoyl-CoA hydratase - rat	95X	P07896	Abnd/S	Simple	uaz348(ech)	8.05
6C06A05, 6C06A06 6C06B04	T15316 T15317 T15318	mevalonate kinase similarity - rat	72X	P17256	Abnd /ES	Simple	uaz337(mvk)	6.08,8.04
5C03E07, 5C06C02	T23301 T18289	oleosin KD18 - maize	703N	J05212	?	?
5C02A01 csu136, csu205	T14763 M95074	phospholipid transfer protein - maize	222X	J04176	Rare	Simple	csu136(plt)	10s
5C03D06	T23297	d(24)-sterol C-methyltransferase - yeast rice dbEST	115X 104X	P25087 D24567	Rare	?
csu125	M95073	chloroplast carbonic anhydrase - pea	59%	X52558	-	-
6C02A04	T18381	CP29 (CAB-binding protein homolog?) Arabidopsis	>180X	X71878	Rare	Simple	uaz200(cab)	7.04
csu66	M95068	Chlorophyll A/B-binding protein - rice	74%	D00642	-	Complex	csu66(cab)	8s
csu71		Chlorophyll A/B-binding protein - maize	99%	X14794	-	Complex	csu71(cab)	1L
csu102	T12718	Chlorophyll A/B-binding protein - rice	93%	X13909	-	Complex	-
csu117	T12725	Chlorophyll A/B-binding protein - Arabidopsis	72%	M63931	-	-
csu224	T18804	Chlorophyll A/B-binding protein - maize	90%	X55892	-	-
csu229	T18809	16kd O2 evolving factor - Spinacia	62%	X05512	-	-
csu74	T12699	ferredoxin - maize	95%	M73828	-	Simple	?
5C03F05	T23307	sulfite reductase similarity - cyanobacteria	73X	P30008	Abnd/S	?
6C01D01	T20381	PEP carboxylase - maize	99%	X15238	Abnd /ES	?
csu18, csu233, csu237, csu267	T12659 T12660 T18812 T18816 T18829	photosystem 1 subunit - barley	66%	X66428	-	-
csu67	T12694 T12695	photosystem K-1 - barley	63%	L12707	-	-
csu185, csu257	T18823	plastocyanin - barley	65%	Y00704	-	-
6C02C05	T18398	RUBISCO, lg subunit - maize	330X	P00874	Abnd/S	Simple	-	Chloroplast
5C11D08	T25266	mitochondrial adenylate kinase - rat	108X	JQ1945	Rare	?
5C04B04,5C05A03	T14672 T14673 T15269	ATP synthase a mitochondrial similarity - yeast	73X	P07251	Rare	Simple	uaz144(atp) uaz254(atp)	4.05-4.07,5.09
5C04E07	T14725	ATP synthase b mitochondrial - maize Arabidopsis dbEST rice dbEST	655X 527X >242X	P19023 46770 37494	Rare	Complex	uaz243(atp)	3.08,6.08, 8.04
csu26		ATP/ADP mitochondrial translocator - maize	100%	X02842	-	Simple	csu26(amt)	5.08
5C04A11	T14665	Bt1 precursor - maize	183X	P29518	Rare	Complex	uaz155(bt1)	10.04
2C01F03	T18745	Bt1-similarity?, MCP similarity? - maize	93X	mzebtia	-	Complex	uaz25(mcp)	2.06,5.02-5.03,8. 04
5C02F05, 5C02H10	T14791 T18669	mitochondrial carrier protein - yeast	115X	P32331	Rare	Complex	uaz282(mcp)	1.06
csu68	T12696 T12697	ADP,ATP carrier protein. precurser - potato	>98	S17917	-	Simple	-
6C02E07	T18416	ATPase vacuolar, nuclear binding subunit - barley	323X	L11862	Abnd/E	Complex	uaz223(atp)	9.04
csu30	M95063	ATPase vacuolar, proteineolipid subunit	85%	M73232	-	Simple	csu30(atp)	3.05
csu37	T12671	ATPase vacuolar, 54-kDa subunit - yeast	89X	D13916	-	Simple	-
csu220	T18800	possible pyrophosphatase? - rice	91%	D15382	-	-	-
5C02E08,5C05B01	T14790 T15272	PPase, vacuolar membrane proton pump - Arabidopsis	>265X	P31414	Rare	Complex	uaz280(pps)	4.00,9.07
5C06E01,5C07D01	T18303 T18643	voltage dependent anion channel (porin) - maize	429X	X77733	Rare	Simple	uaz312(por)	2.06
5C05F04	T15297	cytochrome c & c1 heme lyase motifs rice dbEST	-- 314X	BLOCKS 36333	Rare	Simple	uaz262(gfu)	2.06
5C08B12	T23346	40s ribosomal protein S3 - Xenopus Arabidopsis dbEST	194X 485N	P02350 T21989	Rare	-	-
6C01B02	T20332	40s ribosomal protein S4 - rice	76%	D23071	Rare	-	-
5C06A11	T18283	40s ribosomal protein S5 - rat	495X	P24050	Rare	Simple	uaz308 (rps5)	8.02
5C01A12		40s ribosomal protein S6 homolog - tobacco	108X	S25550	Abnd/E	Complex	uaz119(rps6)	7.05,8.08, 9.05-9.06
5C01A09, 5C04G09, csu34	T18658 T18712 T18713 M95064	40s ribosomal protein S8 homolog - human	>242X	P09058	Rare	Simple	uaz115(rps8)	4.08-4.09
5C02F12 6C02A02	T14795	40s ribosomal protein S11 - maize	333X	P25460	Abnd/S	Complex	uaz251 (rps11)	2.02-2.03, 3.07,6.08, 8.04, 10.05-10.07
5C08C03	T23348	40s ribosomal protein S12 - rat rice dbEST	216X 966N	M18547 D23869	Rare	-
5C01H07	T18275	40s ribosomal protein S14 - maize	438X	P19951	Rare	-
2C01G06	T18747	40s ribosomal protein S21 - yeast	>70X	P05764	-	Complex	-
csu28	M95062	40s ribosomal protein S22 - Xenopus	72%	M34706	-	-
5C01E10, 5C06G08	T18261 T18314	40s ribosomal protein S24 - human	175X	P16632	Rare	Complex	-
5C09A02	T23373	40s ribosomal protein S27 - rat rice dbEST	331X 841N	P24051 D23139	Rare	-
5C02D01, 5C06G06	T14781 T18312	40s ribosomal protein S27A - maize	325X	JS0657	Rare	Complex	uaz249 (rps27a)	1.08,3.04, 8.04,8.10
5C01A05	T18654	40s ribosomal protein S28 - rat	232X	P25112	Rare	Simple	uaz146 (rps28)	1.01
5C03H03, 5C04D11, 5C05D07, 5C09E10, 5C09G08, 5C11D05	T14714 T14715 T15285 T23312 T23403 T23406 T25263	60s ribosomal protein L5 (5s rRNA-binding protein)- yeast rice Arabidopsis	263X 442N 405N	P15125 S39486 Z17506	Rare	Simple	uaz189(rpl5) uaz260(rpl5)	1.01,3.05
rsp81		60s ribosomal protein L7 - human	220X	R5HU7	-	-		2,10
5C01D03, 5C01F07 5C01H05, 5C02H06, 5C04F09	T14756 T14796 T18266 T18273 T18699	60s ribosomal protein L10e homolog - yeast	87X	P15826	Rare	Complex	uaz198 (rpl10)	3.10
5C05D11, 5C07G06	T15288 T23329	60s ribosomal protein L12 - human Arabidopsis rice dbEST	268X 142X 553N	P30050 S29452 D15738	Rare	-
5C02E11, 5C03E11, 5C03G09, 5C04D09	T14711 T14712 T23283 T23304	p23 tumor specific transpl Ag (L13) - human Arabidopsis rice dbEST	387X 381X 934N	A44367 S37230 D24830	Rare	Simple	uaz208(tta) uaz126(tta)	1.12
csu245 5C09E05	T23402	60s ribosomal protein L14 - Xenopus Arabidopsis dbEST	179X 455N	X05025 T21082	Rare	-
5C05G01	T15303	60s ribosomal protein L17 - barley	308X	S35101	Rare	Complex	uaz297 (rpl17)	2.07,6.06, 8.03
5C04B03, 5C04G01, 5C06C05 csu36	T14670 T14671 T14735 T18291 M96065	60s ribosomal protein L19 - human	495X	P14118	Rare	Simple	csu36(rpl19) uaz157 (rpl19) uaz213 (rpl19)	3.10,4.05-4.08 5.05
5C01A04	T18653	60s ribosomal protein L24 homolog - tobacco	62X	M87838	Rare	Complex	uaz270 (rpl24)	4.08-4.09
5C02F01, 5C02F07	T23284 T23285	60s ribosomal protein L30A - yeast Arabidopsis rice dbEST	184X 928N 865N	P04449 Z26463 D23828	Rare	Complex	-
5C05D03, 5C06C03 5C10D04, 6C01D02	T15284 T18290 T20340 T25220	60s ribosomal protein P2 - yeast rice dbEST	222X 846N	P08094 D22651	Rare	Complex	uaz294(lap2)	10.08
csu236	T18815	translation initiation factor 2 - bacteria	54%	X04399	-	-
6C02E11	T18419	translation initiation factor eif2 - human	160X	L19161	Abnd/S	Simple	uaz224(if2)	7.04
6C01A08	T20330	translation initiation factor 4F - wheat	>84X	M95747	Abnd /SE	Simple	?
csu175, csu203 5C06C07, 5C07H01, 5C09D04	T18787 T18836 T18292 T23333 T23399	translation initiation factor 5A - tobacco Arabidopsis rice dbEST	354X 365X 998N	P24921 S31362 D24702	Abnd/E	Complex	uaz303(if5)	7.04
5C03C06, 5C04H09, 5C08H09, 5C10G09 csu116, csu226 rsp35, rsp37	T14798 T14745 T18806 T18726 T23372 T25242 M95072	elongation factor 1a - Arabidopsis	611X	P17786	Rare	Complex	uaz220(eif)	6.02-6.03,6.06, 7.04,8
5C04C04	T14690 T14689	elongation factor 1g - Arabidopsis rice dbEST	215X 684N	L17307 D22778	Rare	Complex	uaz161(eif)	3L,4.10, 6.02-6.033,9.05- 9.06
5C10C06	T25217	elongation factor 1g - Arabidopsis rice	405X 405X 501N	S36462 S36462 D15948	Rare	?
5C10A11	T25212	elongation factor Tu (Ct) - Arabidopsis	231X	P17745	Rare	?
5C03H10,5C10H03 csu63	T12693 T23314 T25244	chaperone DNAJ homolog - Allium Arabidopsis	584X 481X	S42031 S35588	Abnd /ES	?	csu63(cdj)	?
csu52 rsp30		chaperone DNAJ similarity, nuclear envelope protein - yeast	60%	X56560	-	-	uaz109(cdj)	3.01
6C01A04, 6C02E06	T20328 T18415	chaperonin 10kd chloroplast - pea	>276X	Q02073	Abnd /ES	Simple	uaz222 (cpn10)	4.07
6C01D12	T20345	chaperonin (RUBISCO-binding protein, b-subunit ) - rape Arabidopsis dbEST	317X 501N	P21241 Z18404	Abnd /ES	?
5C01H04, 5C02D08 5C06H12, 5C08D04, 5C10A02	T18272 T14785 T18326 T23356 T25208	CD4B (chloroplast ATP-binding chaperonin) - tomato Arabidopsis ERD1 gene rice dbEST	596X 461N 957N	P31542 D17582 D29692	Rare	Simple	uaz242(chp)	10.04
5C03E09	T23302	CLP-TRYBB (chloroplast ATP-binding chaperonin?) - trypanosome	82X	P31543	Abnd/E	?
csu209 5C09H04	T18792 T23409	GOS2 - rice	201X	P33278	-	-
5C06G10	T18316	annexin (synexin) - Dictyostelium	134X	P24639	Rare	Simple	uaz320(anx)	6.01
5C02D02, 5C04G12, 5C05A12, 5C07E12, 5C09D07	T14782 T14740 T15271 T23321 T23396	protein prenyltransferase motifs		BLOCKS	Rare	Simple	uaz255(gfu) uaz277(gfu)	3.02
5C09H10	T23411	Sec61 b-subunit - Arabidopsis	118X	Z26753	Rare	?
2C07F04	T18781	signal recognition part recept a subunit- dog	152X	A24570	-	Simple	uaz8(spr)	3.06-3.07
5C08B07	T23344	signal recognition part recept 9kd protein - C. elegans	179X	P34642	Rare	?
5C01B12, 5C09C01, 5C09C07	T14746 T23387 T23391	aspartyl-tRNA synthetase a chain - rat	429X	P15178	Rare	Complex	uaz132(dts)	5.05-5.06
6C02G11	T18439	seryl-tRNA synthetase homolog - yeast	99X	P07284	Abnd /ES	Complex	uaz236(strs)	2.06,9.04
2C01B05	T18731 T18732	19kd a zein 19A2 - maize	>355X	S15656	Abnd/E	Complex	uaz49 (zp19/22)	2.02-2.03,4.01
2C06H03 spf19, spf24	T18774	19kd a zein 19A20 - maize	539X	zizm2	Abnd/E	Complex	uaz68 (zp19/22)	4.01
2C01B06	T18733	19kd a zein 19A30 - maize	228X	S21970	Abnd/E	Complex	uaz49 (zp19/22)	4.01
2C06H04	T18775	19kd a zein 19AB1 - maize	363X	S03417	Abnd/E	-
5C01H08, 5C04H01 5C10F09,	T14762 T18717 T18718 T25235	19kd a zein 19C2 - maize	622X	P06677	Abnd/E	Complex	-
5C03B07, 5C10F12	T25206 T25237	19kd a zein CLO - maize	317X	P06675	Abnd/E	Complex	uaz219 (zp19/22)	4.01
5C02A08, 5C06F03 spf6, spf28	T14767 T18306	19kd a zein 19D1 - maize	563X	P06678	Abnd/E	Simple	uaz5(zp19 /22) uaz272 (zp19/22)	1.05
5C03G02, 5C11E08 spf20	T18673 T25269	19kd a zein PMS2 - maize	434X	P24450	Abnd/E	Complex	uaz149 (zp19/22)	4.01
2C06D05	T18768	19kd a zein ZG31A - maize	>190X	S21965	Abnd/E	Complex	-
5C04D05	T14706	22kd a zein pML1 - maize	315X	X14334	Abnd/E	Complex	-
5C03B06, 5C04F08 5C10H10,5C11C04	T18672 T14733 T25249 T25258	22kd a zein PZ22.1 - maize	>299X	P04700	Abnd/E	Complex	uaz185 (zp19/22)	4.01
5C02C05, 5C02C08	T14751 T14780	22kd a zein PZ22.3 - maize	559X	P04698	Abnd/E	Complex	-
spf10 5C10E04	T25226	22kd azein ZA1 - maize	569X	B22831	Abnd/E	-
2C07D02 5C02A02, 5C02A03, 5C04E12, 5C04G06 spf8	T14764 T18780 T18689 T18708 T18662	16kd b zein ZC1 - maize	>523X	P06673	Abnd/E	Complex	uaz169 (zp16)	6.01
5C05D05, 5C07F10	T23316 T23323	10kd d-zein - maize	407X	JA0086	Abnd/E	Simple	-	6.06,9.04
rsp80, rsp92		g zein - maize	>217X	zmzm19	Abnd/E	Simple	-	7s
g zein		g zein - maize				Simple	uaz327(gz)	2.07
6C01C02	T20336	g zein genomic region similarity - maize	207N	X58197	Rare	Simple	?
5C04B07	T14678 T14679	glutenin similarity - wheat rice dbEST	>73X 712N	A30843 D21910	Rare	Simple	uaz230(gfu)	4.05-4.06,6.10
5C07G01	T23325	napin gene - Brassica napus	577N	M64633	Rare	?
5C09A06	T23374	acylamino acid-releasing enzyme - pig	106N	D00524	Rare	?
csu223	T18803	cystatin - maize	90%	D10622	-	-
5C04A08, 5C09B03, 5C09C03 rsp96, rsp111	T14663 T23379 T23389	chymotrypsin inhibitor - barley	292X	S37493	Rare	Simple	uaz232(sci)	2.09
6C02H08	T18444	lysosomal proteinease similarity - wheat	?		Rare	Simple	uaz234(pros)	2.06
5C07B07 6C01C07	T18636 T20337	mitochondrial processing protease - rat	458X	B48529	Rare	Complex	?
2C01C07	T18736	oligopeptidase A - bacteria	>102X	A42298	-	Simple	uaz100(prc)	10.02-10.03
5C01H12	T18278	proteasome C5 complex - human	288X	P20618	Rare	Simple	uaz226(prc)	1L
5C02A05, 5C09B05	T14766 T23381	proteasome C9 complex - human rice dbEST	316X 349N	P25789 D22304	Rare	Simple	uaz237(prc)	6.01,9.02
csu5	M95060	thiol protease - rice bean	65%	X15732	-	Simple	thp1	7.03
csu96	M95070	thiol protease inhibitor	81%	M29259	-	Simple	csu96(thp)	9
5C03B04 rsp11, rsp21	T18671	Trypsin/Factor 7A inhibitor - maize	378X	P01088	Abnd/E	Smear	-
5C04F01	T14729	b32 protein RIP3 - maize (rip1)	613X	P25891	Abnd/E	Simple	uaz193(rip)	8.04-8.05
5C04B01, 5C07A12, 5C09D11, 5C11D07	T18677 T18631 T23398 T25265	b32 protein RIP9 - maize	474X	P25892	Abnd/E	Simple	uaz156(rip)	3.08
5C06F11, 5C06H09	T18321 T18324	ribonculease PH homolog- E. coli rice dbEST	94X 933N	P03842 D23232	Rare	Simple	uaz313(rns)	8.03
5C05E10	T15294	metallothionein I similarity - castor bean Arabidopsis dbEST	158X 672N	P30564 T04702	Rare	Complex	uaz300(mtl)	3.04,6.01
csu169, csu206	T12751 T18790	metallothionein homolog - maize	511N	S57628	-	-
6C02F11	T18429	actin AC1 - carrot rice dbEST	170X 451N	J01238 D25019	Abnd/S	Complex	uaz233(act)	8.04-8.05,6.01 7.04
5C01H03,5C08E04	T18271 T23361	actin 97 - potato Arabidopsis rice	622X 1241N 1233N	P30171 M20016 X15863	Rare	Complex	-
5C10D06	T25221	clathrin coat assembly protein - C. elegans	204X	P35602	Rare	?
5C06B09	T18287	profilin - maize	346X	P35081	Rare	Simple	uaz305(prof)	6.01
5C11B05 6C01F07, 6C04E06 csu272	T20355 T25254	a-tubulin 1 - maize Arabidopsis	99% 1232N	X15704 M84697	Abnd /SE	Simple	uaz177(tua)	2.00
6C02D05, 6C03A07 6C06C08, 6C06D02	T18407 T15329 T15332 T25274	a-tubulin 3 - maize	558X	S28429 P22275	Abnd/E	Complex	uaz201 (tua3)	5.01
6C06B09	T15321	a-tubulin 6 - maize	584X	P33627	Abnd/E	Complex	uaz315(tua)	2.09,7.04
csu148	T12741	calnexin - Arabidopsis	192X	P29402	-	-
5C06B08	T18286	caltractin - Scherffeli	440X	X69220	Rare	Simple	uaz322(cal)	7.05
5C06D10	T18301	uromodulin (fibrillin) - rat	105X	P27590	Rare	Simple	uaz304(hon)	1.04,9.04
6C02C10	T18403	Ser-Lys-rich protein	--	-	Abnd/S	Simple	?
5C04B11, 5C05A01	T14685 T14686 T15267	Ala-repeat protein	--	-	Rare	Simple	uaz159(gfu)	5.02-5.03
6C02B04	T18390	Lys-Glu-rich protein	--	-	Rare	Simple	uaz202(gfu)	8.04
5C02D07	T14784	Arg-Pro-rich protein	--	-	Rare	Simple	uaz342(gfu)	9.05-9.06
6C02F01	T18421	Pro-Pro-rich protein (extensin-like)	--	-	Abnd/E	Complex	-
6C02F03	T18423	Pro-Val-rich protein (extensin-like)	--	-	Abnd/E	Simple	uaz192(gfu)	7.05-7.06
5C05D01	T15283	hydroxyproline rich(Ser,Pro) protein - rice	83X	S20500	Rare	Simple	uaz341(gfu)	4.05-4.06
5C07C09	T18649	glycine-rich cell wall protein homolog - rice	101	P29834	Rare	Smear	-
6C02D09	T18409	glycine-rich protein - tomato	>68X	X55691	Rare	Smear	-
csu190	T18848	auxin-induced mRNA - tobacco	82%	X56267	-	-
5C05E12	T15295	ABA-induced, stress, ripening protein - tomato rice dbEST	94X 418N	L08255 D23985	Rare	Simple	?
csu108	M95071	GTP-binding protein	77%	M35520	-	Simple	csu108(gbp)	5s
csu234	T18813	ras-related GTP-binding protein - rice	64%	D17779	-	-
5C03G12, 5C07G05	T14655 T23328	GTP-binding protein SAR1 - Arabidopsis rice dbEST	354X 258N	Q01474 D21890	Rare	Simple	uaz151(gbp)	1.09
5C04D03	T18680	GTP-binding protein, developmentally regulated - mouse Arabidopsis dbEST	283X 289N	D10715 T14006	Rare	Simple	uaz245(gbp)	7.05
5C10C02	T25214	GTP-binding protein YPTM2 - maize Arabidopsis	458X 412X	Q05737 P28188	Rare	?
5C01G12	T18270	guanine nuclear-binding protein b subunit - yeast	119X	S19487	Rare	Complex	uaz310(gbp)	4.03-4.04,6.00
5C06B04	T18285	guanine nuclear-binding protein b subunit - yeast	97X	S19487	Rare	Simple	uaz306(gbp)	9.02
5C05C03	T15277	guanine nuclear-binding protein b subunit - yeast rice dbEST	97X 175X	S19487 36095	Rare	Simple	uaz257(gbp)	4.05-4.06
5C08C12	T23353	G-protein b subunit - Arabidopsis dbEST rice dbEST	119X 594N	Z29843 D23414	Rare	?
5C04C02	T14687	TDR3 homeotic (MADS) - tomato rice dbEST	188X 411N	X60756 D22380	Rare	Complex	uaz231(mad)	9.07-9.08
csu137	T12732 T12733	MADS box (agamous) - Arabidopsis	70%	X53579	-	Simple	csu137(mad)	1.12,5.02-5.03
5C09A09	T23377	protein kinase (CTR1) - Arabidopsis	204X	L08789	Rare	?
5C03D08, 5C04A03	T14658 T14659 T23298	protein kinase (Tousled) - Arabidopsis	380X	L23985	Rare	Complex	uaz130(tpk)	1.12,4.05-4.06 5.02-5.03
5C04G11, 5C07B02	T18714 T18715 T18633	Ca-dependent protein kinase - Arabidopsis	319X	L14771	Rare	Complex	uaz197 (cdpk)	6.01,6.01
csu231	T18811	protein kinase - rat	60%	M16112	-	-
csu252	T18821	MAP protein kinase - tobacco	80%	X69971	-	-
5C08E10	T23364	MAP kinase (STE7) - yeast Arabidopsis rice dbEST	175X >61X 364N	P06784 P25859 D24368	Rare	?
5C02A07	T18663	protein kinase (tyr-ser-thr) Arabidopsis rice dbEST	225X 135X	L07248 38402	Rare	Simple	uaz252(ptk)	4.07-4.08,8.04
5C05H12,5C09D08	T15315 T23397	protein kinase (tyr) homolog - pig	73X	Q00655	Rare	Simple	uaz299(ptk)	5.05,6.01
5C08B04	T23342	14-3-3 homolog - maize	510X	Q01526	Rare	Simple	ufg7(tau)	2.05,10.05-10.06
csu64	M95066	14-3-3 homolog - human	72%	J03868	-	Simple	csu64(tau)	1.10,2.10
5C07A05	T18627	14-3-3 homolog - tomato rice dbEST Arabidopsis dbEST	429X 955N 833N	L29150 D24218 L09109	Rare	Complex	uaz331(tau)	1.06,2s,3.05
5C04C05	T14691	phosphoprotein phosphatase - Drosophila	218X	S29396	Rare	Complex	uaz244(prh)	6.06,8.03
5C06G06?	T18312?	transcription activator - virus	206X	P03209	Rare	?
5C04C08, 5C06D02 5C11E10	T14694 T25270	myb transfer protein similarity - virus	81X	A28013	Rare	Complex	uaz216(gfu)	4.05-4.06
5C07C04	T18641	nucleolar transcription factor similarity - rat	>65X	P25978	Rare	Simple	uaz335(ntf)	4.05-4.06
5C03F11	T23308	transcription factor BTF3a - human	99X	JC1235	Rare	?
5C09C08	T23392	transcription factor s1Fa - spinach rice dbEST Arabidopsis dbEST	246X 666N 484N	X79543 D22962 T20524	Rare	?
5C04D07	T14709 T14710	transcription factor, Zn finger similarity - virus rice dbEST	96X 619N	P27426 D24735	Rare	Simple	uaz207(tfz)	2.05
csu150	M95075	RNA Polymerase II - yeast	73%	M15693	-	Simple	csu150(rpo)	5.02-5.03,6.01
csu17	T12657 T12658	chloroplast 31kd ribonucleoprotein - tobacco	60%	X53942	-	Simple	csu17(rnp)	2.09
5C02D05, 5C11F03 6C01H06	T14783 T25271 T20367	U1 small nuclear ribonucleoprotein similarity	>39X	M18465	Rare	Simple	uaz346(gfu?)	10.08
5C07C06	T18642	RNA binding protein (splicing) - Drosophila rice dbEST	>184 276N	L04929 D24389	Rare	?
fpl6		RNA-binding protein - maize			-	Complex	uaz240(rnb)	1.15,5.11-5.12 6.11
5C04G05, 5C05C12	T14737 T15282	RNA-binding protein (GAP-associated tyr phosphoprotein) - human Arabidopsis dbEST	>82X 315X	M88108 49463	Rare	Simple	uaz214(rnb) uaz259(rnb)	5.00
5C02G05 6C01E07, 6C02G01, 6C02G12 csu195, csu208 , csu215	T18431 T20349 T18440 T18666 T18791 T18852 T18796	glycine-rich protein, ABA - and H2O-inducible, RNA binding - maize rice dbEST Arabidopsis gene	133X 219N 103X	P10979 D23787 Q03250	Abnd /ES	Simple	?
6C02F05	T18425	DNA-binding protein - Drosophila	73X	P13469	Abnd /ES	Simple	uaz318(nbp)	2.02-2.03, 10.08
5C08B05	T23343	DNA-binding protein - maize	215N	X66076	Rare	?
6C04B07, 6C06D05	T15333 T25277	DNA-binding protein similarity - wheat	77X	P25032	Abnd/S	Simple	uaz179(nbp)	2.06
2C06G06 5C05F12, 5C05G04, 5C06B02	T15305 T15302 T18284 T18772	CAAT box-binding protein - maize	285X	zmnfyb	Rare	Simple	uaz7(caat)	7.01-7.02
5C06A10	T18282	G-Box binding factor similarity - Dictyostelium	90X	L29705	Rare	?
5C09C10	T23393	Drome Matern Tudor protein similarity? - Drosphila Arabidopsis dbEST	>72X >277X	P25823 21180	Rare	?
csu56	T12687	leucine zipper transcript regulator- maize	94X	L00623	-	Complex	csu56(ohp)	2.05
5C01G03	T18267	OCS-element binding factor similarity rice dbEST	83X 582N	P24068 D23215	Rare	Simple	?
6C01F12	T20358	TAT-binding homog1 - yeast rice dbEST	242X 168X	P33297 36651	Abnd /ES	Simple	uaz345(zta)	5.02-5.03,5.11-5. 12
5C01A07,5C07G04	T18656 T23327	TAT-binding homolog 2 - yeast	172X	P33298	Rare	Simple	uaz118(zta)	4.08
5C01E06	T18258	Paired amphipathic helix protein - yeast Arabidopsis dbEST	105X 516N	P22579 T04565	Rare	Simple	?
5C05C11, 5C05H07	T15281 T15313	TATA-binding protein - maize Arabidopsis dbEST	220X 146X	S32622 49207	Rare	Simple	?
6C02C08	T18401	histone H2A - pea	95X	P25470	Abnd /ES	Complex	uaz221 (his2a)	7.04
5C04D12, 5C09G02 5C10F10, 6C06C02 csu285	T14716 T15325 T18835 T23405 T25236	histone H2B - maize rice dbEST Arabidopsis dbEST	300X 658N 169X	P30756 D15709 S30619	Rare	Complex	uaz228 (his2b)	1.09.2.07, 4.05-4.06, 10.04
5C03H09, 5C05D06, 5C08D05	T14800 T23317 T23357	histone H3 - Arabidopsis rice dbEST	>494X 943N	S24346 D15959	Abnd /ES	Simple	uaz248(his3)	1.04,5.07
5C02C03	T14777	histone H4 - maize	233X	A25642	Rare	Simple	?
Rice54		Sm-D nuclear antigen - rice	--		-	-	uaz290 (sdag)	8.03
csu146	T12739	CDC48 - yeast	60%	X56956	-	Simple	csu146 (cdc48)	6.01
6C01G11	T20363	ATPase (CDC48) - yeast	67%	L14616	Rare	?
5C08F01	T23366	nucleolin (topoisomerase I) - frog	110X	S32644	Rare	?
5C09D05	T23395	replication factor-A protein 1 - yeast	>83X	P22336	Rare	?
5C11E05	T25268	AC15 activator 140kd subunit - human	112X	P35251
5C08D02	T23354	DNA Polymerase I - Bacillus	112X	D12982	Rare	?
5C10D10	T25298	RAD16, DNA repair - yeast	117X	P36617	Rare	?
6C06D10	T15336	pG1 protein (transforming) - human	159X	A44803	Rare	?	chloroplast?
6C02C02	T18395	retinoblastoma associated protein - human	132X	P28749	Abnd /SE	Simple	uaz191(rap)	2.09
5C04A12	T14666 T14667	early nodulin - soybean rice dbEST	230X 760N	D13506 D15238	Rare	Simple	uaz227(end)	6.01
6C06E02	T15338	early nodulin 8 - soybean rice dbEST	95X 309N	L18899 D24693	Rare	?
csu177	T18838	nodulin 26 similarity - rice dbEST	70%?	D17443	-	-
5C03C09	T25207	early nodulin - soybean rice dbEST	199X 640N	S34801 D15436	Rare	Simple	uaz122(end)	4.05-4.06
5C01C06	T14752	vegetative specific protein - Dictyostelium rice dbEST Arabidopsis dbEST	115X 821N 814N	P14327 D15817 Z29019	Abnd/E	Simple	uaz246(vsp)	4.05-4.06
5C04E06,5C06H10	T15305 T18322	Ac transposase similarity - maize	>152X	X01380	Rare	Complex	uaz285 (tpase)	1.08,5.06 8.04-8.05
csu12	M95061	CIN4 retroelement similarity - maize	67%	Y00086	-	Complex	csu12(cin4)	2.04,4.05-4.06
6C02E02,6C06C01	T18413 T15324	male sterile similarity MS2 - Arabidopsis	154X	X73652	Abnd/E	Simple	uaz195(ms)	4.05-4.06
csu19	T12661 T12662	cold regulated gene - barley	83%	M60733	-	Simple	csu19(cld)	4.03-4.04
2C02A04 csu192, csu206	T18753	iron deficiency-induced gene - barley	136X	bylids3	-	Simple	uaz80(fei)	6.00
5C05G11	T15309	17.4kd heat shock - rice Arabidopsis dbEST	183X 84X	P31673 33680	Rare	Simple	uaz264(hsp)	1.03,9.05-9.06
5C02D11	T14788	17.6kd heat shock chloroplast - cheno rice dbEST	182X 568N	P11890 D15924	Rare	Simple	uaz171(hsp)	4.05-4.06
5C04F02,5C04H02	T14730 T18719 T18720	18kd heat shock - maize	119X	P24631	Abnd/E	Simple	uaz210(hsp)	3.02
5C04D01	T14700 T14701	70kd heat shock mitochondrial - Phaseolus rice dbEST	654X 1335N	Q01899 D15740	Rare	Complex	uaz205(hsp)	1.09,5.02-5.03
6C01E09	T20351	70kd heat shock - carrot rice dbEST	153X 333N	P26791 D22078	Abnd/S	Complex	?
csu179 5C08E07	T18839 T23363	70kd heat shock - maize Arabidopsis dbEST rice dbEST	369X 344X 897N	P11143 P22953 D22323	Rare	?	?
5C04F03, 5C04H04	T18692 T18693 T14741	80kd heat shock chloroplast - spinach	549X	M99565	Rare	Simple	uaz211(hsp) uaz219(hsp)	5.02-5.03
5C07B01	T18632	82kd heat shock protein - Arabidopsis rice dbEST	431X 899N	A48426 Z11920	Rare	Simple	uaz332(hsp)	6.01
csu274	T18833	83kd heat shock - rice	90%	Z11920	-	-
5C01G10, 5C09C12	T14760 T23394	low temperature-specific gene - barley or salt stress induced hydroph - wheatgrass	189X	Z25537	Abnd /ES	Simple	uaz250(str)	10.04
5C10E03	T25225	glycine-rich protein ua3 - tomato	119X	S14984	Rare	?
5C04C03, 5C04F07 csu133	T18697 T12729 T14688	pathogenesis related protein PR2 - bean	>84	S14730	Rare	Complex	uaz283(prp)	2.05
5C05B11	T15276	wound induced basic protein - Phaseolus rice dbEST	102X 326N	JS0731 D15315	Rare	Simple	uaz293(wip)	4.03-4.04
rsp75		wound-induced protein inhibitor similarity - tomato	61X	A34359	-	-
5C07B03, 5C08A02 5C10F08,	T18634 T23338 T25234	hypothetic protein FMR1 similarity - human rice dbEST	>84 845N	A39530 D25209	Rare	Simple	uaz317(fmr)	1.01
5C06F05	T18308	essential embryonic gene - chicken rice dbEST	139X 487N	B44882 D15882	Rare	Simple	?
5C01F05, 5C05H02, 5C06A01	T18264 T18279	ABC1 gene similarity - yeast	82X	Z28353	Rare	Simple	uaz263(abc)	4.07

The following are clones which have been mapped but where sequence information is either not yet available or does not indicate a significant similarity:

			Similar Sequence
I* Clone Designation	II GenBank Access. #	III Putative Gene Product	IV Score	V Access #	VI Express. Pattern	VII Genomic Complexity	VIII Locus Name	IX Genomic Location
1C06C04							uaz36(gfu)	2.05
1C07A11						Simple	uaz82(gfu)	7.04
2C01A03	T18729 T18730	a-zein by seq. but not hybrid?				Simple	uaz34(gfu?)	2.04
2C01A05						Simple	uaz79(gfu)	5.07
2C01B08	T18734	a-zein by hybrid but not seq.?				Complex	uaz66(gfu?)	4.01,4.07
2C01B12						Simple	uaz89(gfu)	7.03
2C01C05	T18735	no significant similarity				Complex	uaz43(gfu?)	6.08
2C01C09	T18737	no significant similarity				Simple	uaz29(gfu?)	2.06
2C01C11	T18738	extensive vector seq.?				Simple	uaz98(gfu?)	10.04
2C01D12	T18739 T18740	extensive vector seq.?				Simple	uaz3(gfu?)	1.03
2C01E03						Complex	uaz49(gfu)	2.01
2C01E11	T18743	no significant similarity				Simple	uaz74(gfu?)	4.08
2C01E12		a-zein?				Complex	uaz48(gfu)	4.05-4.06
2C01F01						Complex	uaz70(gfu)	4.01,5.07
2C01F02	T18744	no significant similarity				Simple	uaz24(gfu?)	2.01,10.04
2C01F04	T18746	no significant similarity				Complex	uaz18(gfu?)	1.09,2.06, 3.07,6.00
2C01F05						Complex	uaz33(gfu)	2.10,4.05-4.06
2C01F07	?					Complex	uaz35(gfu?)	3.04
2C01F08						Complex	uaz90(gfu)	7.03
2C01F10						Complex	uaz28(gfu)	2.06,7.03-7.04
2C01F11						Simple	uaz23(gfu)	2.09,6.01
2C01G08	?					Simple	uaz72(gfu?)	4.05-4.06
2C01H06	T18748	no significant similarity					uaz2(gfu?)	2.09
2C01H09						Simple	uaz015(gfu)	1.05
2C02A02						Simple	uaz97(gfu)	10.04
2C02A03	T18752	no significant similarity				Simple	uaz27(gfu?)	2.04,7.01-7.02
2C02B02	T18754	no significant similarity				Simple	uaz95(gfu?)	8.07-8.08
2C02B04	T18755	no significant similarity				Simple	uaz20(gfu?)	1.09,7.01-7.02
2C02B05	?					Simple	uaz2(gfu?)	1.01,1.09
2C02B10						Complex	uaz19(gfu)	1.09,3.04, 6.08,7.01-7.02
2C02F02						Complex	uaz14(gfu)	9.07-9.08
2C02F12						Complex	uaz38(gfu)	3.06,4.01
2C02G02	?						uaz4(gfu?)	7.07-7.08
2C02G12		a-zein by hybrid?				Complex	uaz069(gfu)	4.01,4.03-4.04
2C02H02	T18759	no significant similarity				Complex	uaz17(gfu?)	1.05,4.01
2C02H06	T18760 T18761	a-zein by hybrid but not seq.?				Complex	uaz41(gfu?)	4.01,4.05-4.06
2C02H07						Complex	uaz21(gfu)	1.05,1.12, 2.00,10.01
2C02H08	T18762	several rice dbESTs including:		C0962A C1533 1A		Simple	uaz77(gfu?)	5.06
2C03A07						Simple	uaz37(gfu)	3.05
2C03C09						Complex	uaz68(gfu)	4.01,7.01-7.02
2C03C11						Simple	uaz78(gfu)	5.07
2C03D01						Simple	uaz92(gfu)	7.04
2C03D02						Simple	uaz84(gfu)	7.01-7.02
2C03G04	T18763 T18764	no significant similarity				Simple	uaz96(gfu?)	9.07-9.08
2C03G07	T23310	no significant similarity				Simple	uaz83(gfu)	7.01-7.02
2C03H04						Simple	uaz71(gfu)	4.05-4.06, 5.11-5.12
2C04B10						Simple	uaz4(gfu)	1.04
2C04C03						Simple	uaz1(gfu)	1.02
2C04D01						Simple	uaz81(gfu)	6.08
2C04E02						Simple	uaz22(gfu)	1.15
2C04H05							uaz75(gfu)	5.00
2C04F10						Simple	uaz39gfu)	3.09
2C04G04	T18765	a-zein by hybrid but not seq?				Complex	uaz65(gfu?)	4.01,4.08
2C05A02		a-zein by hybrid?				Complex	uaz7(gfu)	4.01
2C05C05						Simple	uaz40(gfu)	9.07-9.08
3C01A08							uaz110(gfu)	3.09
3C01B04							uaz111(gfu)	5.04,5.06
3C01C03	?						uaz112(gfu?)	9.05-9.06
5C01A01					Rare	Simple	uaz116(gfu)	10.02-10.03
5C01A06,5C015E06	T18655	Arabidopsis dbEST	>49	14637	Rare	Complex	uaz117(gfu?)	3.10,7.04 10.04
5C01C05	T14751	a-zein by seq but not hybrid?			Rare	Simple	uaz128(gfu?)	8.10
5C01C08					Abnd /ES	Simple	uaz147(gfu)	7.04-7.05
5C01G07					Rare	Complex	uaz114(gfu)	3.09
5C01H02					Abnd/E	Simple	uaz168(gfu)	5.07
5C01D11, 5C02A09 5C04G03,5C05A02	T14736 T14768 T15268 T14759	no significant similarity			Rare	Simple	uaz273(gfu?) uaz276(gfu?) uaz253(gfu?)	1.05
5C02A11	T18664	rice dbEST	480N	D16016	Rare	Complex	uaz274(rest)	1.05,2.08
5C02B05	T14772	human ORF HUMRSC399-1	77X	D13642	Rare	Simple	uaz275 (hest)	5.05
5C02B08	T14774	no significant similarity			Rare	Complex	uaz286(gfu?)	1.09
5C02D10	T14787	no significant similarity			Rare	Simple	uaz170(gfu?)	4.05-4.06
5C02E07	T25205	no significant similarity			Rare	Simple	uaz148(gfu)	9.07-9.08
5C02G02	T18665	no significant similarity			Rare	Complex	uaz288(gfu?)	2.02-2.03,3.05
5C02G08	T18667	ORF - fungi	>82X	P09379	Rare	Simple	uaz281(yorf)	4.05-4.06
5C03C07					Rare	Simple	uaz120(gfu)	1.02
5C03C08, 5C06H11, 5C08E01	T18325 ? T23293	no significant similarity			Rare	Simple	uaz121(gfu)	6.06,8.04
5C03D03		rice dbEST	355X	37832	Abund /E	?
5C03E06, 5C04B06, 5C09B07,	T14677 T23300 T23383	yeast cDNA YBL0507	235X	Z23261	Rare	Complex	uaz241(yest)	2.09,7.05
5C04E11					Rare	Complex	uaz173(gfu)	7.01-7.02
5C03G07	T23310	H326, ubiq expressed gene - human	143X	U06631	Rare	Complex	uaz123(gfu)	4.08,6.10 7.03-7.04
5C03H11	T18674	rice dbEST	>396N	D15619	Abnd /ES	Simple	uaz186(rest)	5.05
5C04A02	T14657	PPDK seq similarity?			Rare	Simple	uaz153(gfu?)	10.02-10.03
5C04A05	?	no significant similarity			?	?	uaz131(gfu?)	?
5C04B09	T14682 T14683	no significant similarity			Rare	Complex	uaz287(gfu?)	6.04-6.05
5C04B11, 5C05A01	T14685 T14686	no significant similarity			Rare	Simple	uaz159(gfu?)	5.02-5.03
5C04C01	T23315	no significant similarity			Rare	Simple	uaz160(gfu)	6.04-6.05
5C04C07, 5C08D03	T14692 T14693	no significant similarity			Rare	Simple	uaz199(gfu?)	7.04
5C04C09	T14695 T14696	no significant similarity			Rare	Complex	uaz289(gfu?)	9.02
5C04C10					Rare	Simple	uaz203(gfu)	1.05
5C02B03, 5C04C12 5C10E06	T14699 T25228	no significant similarity			Rare	Simple	uaz187(gfu?)	7.01-7.02
5C04D02	T14702 T14703	no significant similarity			Rare	Complex	uaz279(gfu?)	4.08,5.07
5C04D07	T14709 T14710	rice dbEST		D24735 D23733	Rare	Simple	uaz207(gfu?)	2.05
5C01F06, 5C04E03	T14717 T14718	Arabidopsis dbEST	178X	40286	Rare	Simple	uaz209(gfu?)	6.06
5C04F03	T18692 T18693	no significant similarity			Rare	Simple	uaz211(gfu?)	5.02-5.03
5C04F06, 5C05G10 5C10F02	T14731 T25231	yeast ORF YBL026	111X	Z35787	Rare	Simple	uaz212(gfu?)	4.03-4.04
5C04F09	T18699	rice dbEST		D23229	Rare	Simple	uaz271(gfu?)	3.10
5C04H05, 5C04E10 5C04H07, 5C09G11	T14742 T14728 T14744 T23407	no significant similarity			Rare	Simple	uaz278(gfu?)	7.05
5C05B06	T15275	no significant similarity			Rare	Simple	uaz256(gfu?)	6.08
5C05C08	T15279	no significant similarity			Rare	Simple	uaz258(gfu?)	6.01,8.05
5C05D02	T14782	no significant similarity			Rare	Complex	uaz267(gfu?)	1.02
5C05D08, 5C10E12	T15286 T25230	Arabidopsis dbEST	187X	48449	Rare	?
5C05E08	T15293	rice dbEST Arabidopsis dbEST	298X 269X	38193 21098	Rare	?
5C05F04	T15297	rice dbEST		D22938	Rare	Simple	uaz262(gfu?)	2.06
5C01E08, 5C04A09, 5C05G02	T15304 T14664	no significant similarity			Rare	Simple	uaz349(gfu?)	4.05-4.06
5C05F08	T15300	Arabidopsis dbEST	130X	52289	Rare	?
5C05H10, 5C07H02	T15314 T23334	Arabidopsis dbEST	>42X	33669	Rare	Complex	uaz268(gfu?)	1.11,5.13 7.01-7.02
5C06A03	T18280	no significant similarity			Rare	Simple	uaz307(gfu?)	8.01
5C06C11	T18295	no significant similarity			Rare	Simple	uaz302(gfu?)	2.06
5C06E09	T18305	no significant similarity			Rare	Simple	uaz311(gfu?)	1.05-1.06
5C06G02, 5C08E06	T18309 T23362	no significant similarity			Rare	Simple	uaz314(gfu?)	1.02
5C06G11	T18317	no significant similarity			Rare	Simple	uaz316(gfu?)	1.02
5C07A01					Rare	Simple	uaz330(gfu)	6.01
5C07B03	T18634	no significant similarity			Rare	Simple	uaz317(gfu?)	9.09
5C07B04	T18635	no significant similarity			Rare	Simple	uaz323(gfu?)	?
5C07B09	T18638	no significant similarity			Rare	Simple	uaz333(gfu?)	8.08,?
5C07B10					Rare	Simple	uaz325(gfu)	5.05
5C07B12	?	no significant similarity			Rare	Simple	uaz343(gfu?)	4.07
5C07C01	T18640	no significant similarity			Rare	Simple	uaz326(gfu?)	1.04
5C07C02					Rare	Simple	uaz334(gfu)	2.08
5C07C05					Rare	Simple	uaz328(gfu)	8.08
5C07C11					Rare	Simple	uaz336(gfu)	6.01
5C07H06	T23336	human dbEST	>41X	27225	Rare	?
5C10A12	T25213	Arabidopsis dbEST rice dbEST	505N 415N	T21425 D23534	Rare	?
5C10D01	T25219	rice dbEST	548N	D15308	Rare	?
5C10D12	T25222	rice dbEST	400N	D23153	Rare	?
5C10F02	T25231	yeast ORF	111X	Z35787	Rare	?
5C11B12	T25256	Arabidopsis dbEST	560N	T21425	Rare	?
6C01B07	T20375	no significant similarity			Rare	Simple	uaz174(gfu?)	4L,8.09
6C01B09	T20376	no significant similarity			Rare	Complex	uaz175(gfu?)	4.08,10.04
6C01C11	T20380	rice cDNA	80%	D24362	Abnd /SE	Simple	uaz344(rest)	2.05,7.01-7.02
6C01D08	T20397	no significant similarity			Abnd/S	Simple	uaz140(gfu?)	2.09
6C01E05					Rare	Simple	uaz125(gfu)	9.05-9.06
6C01E10					Rare	Complex	uaz176(gfu)	3.07,8.07-8.08
6C01F02	T20353	no significant similarity			Abnd/S	Simple	uaz162(gfu?)	6.01
6C01F06	T20354	no significant similarity			Abnd/S	Complex	uaz164(gfu?)	3.03,3.08, 5.07,8.06
6C01G04	T20360	Arabidopsis dbEST	70%	Z24464	Abnd /SE	?
6C01G05	T20391	no significant similarity			Rare	Complex	uaz138(gfu?)	1.09,5.07 8.07
6C01H07	T20395	rice dbEST	83%	D23915	Abnd /SE	?
6C02F05	T18425	no significant similarity			Rare	Simple	uaz318(gfu?)	2.02-2.03,10.08
6C03A07	T25274	Arabidopsis dbEST rice dbEST	524X 1117N	P29511 Z11931	Abnd /SE	Complex	uaz163(gfu)	5.02-5.03
6C03A08					Abnd /SE	Complex	uaz134(gfu)	5.01
6C03G05					Abnd/S	Simple	uaz135(gfu)	2.06
6C04B04	T25275	no significant similarity			Abnd/S	Simple	uaz178(gfu)	10.02-10.03
6C04B05	T25276	no significant similarity			Rare	Simple	uaz165(gfu)	8.04-8.05
6C04B11					Abnd /SE	Simple	uaz166(gfu)	1.12,5.02-5.03
6C04C04	T25278	no significant similarity			Abnd /SE	Simple	uaz143(gfu)	7.01-7.02
6C04C05					Abnd /SE	Complex	uaz180(gfu)	4.02
6C04C06					Abnd /SE	Simple	uaz142(gfu)	4.05-4.06
6C04C08					Rare	Simple	uaz181(gfu)	2.06
6C04D10					Abnd/S	Simple	uaz137(gfu)	4.05-4.06
6C04E01					Abnd /SE	Simple	uaz139(gfu)	1.03
6C04E06	T25279	no significant similarity			Abnd /SE	Simple	uaz167(gfu)	1.11,5.02-5.03
6C04F04					Abnd/E	Simple	uaz141(gfu?)	9.03
6C06A03	T15340	C. elegans ORF	108X	L14745	Abnd/S	Simple	uaz136(cest)	7.03
6C06A10					Rare	Simple	uaz133(gfu)	3.09
6C06C06	T15327	E. coli ORF	125X	P22564	Rare	Complex	-
csu3	T12525 T12526	no significant similarity			-	Simple	csu3(gfu?)	1.05
csu4	T12527	no significant similarity			-	Simple	csu4(gfu?)	2.06
csu6	T12528 T12529	rice dbEST		D22140	-	Complex	csu6(gfu?)	10.04
csu7	T12530 T12531	rice dbEST		D24964 D24860 D24862	-	Complex	csu7(gfu?)	1.15,7.01-7.02
csu9	T12534	no significant similarity			-	Simple	csu9(gfu?)	2.10
csu10	T12535 T12536	no significant similarity			-	Simple	csu10(gfu?)	5.02-5.03
csu11	T12653 T12654	no significant similarity			-	Simple	csu11(gfu?)	7.01-7.02
csu29	T12666	no significant similarity			-	Simple	csu29(gfu?)	8.02
csu31	T12667 T12668	no significant similarity			-	Simple	csu31(gfu?)	8.07-8.08
csu32	T12669	Arabidopsis dbEST		27017	-	Simple	csu32(gfu?)	3.01
csu33	T12670	no significant similarity			-	Complex	csu33(gfu?)	5.01
csu46	T12676	rice dbEST		D24411	-	Simple	csu46(gfu?)	2.06
csu48	T12677 T12678	Arabidopsis dbEST	70%	Z17560	-	Complex	csu48(gfu?)	5.02-5.03
csu49	T12679 T12680	no significant similarity			-	Simple	csu49(gfu?)	2.06
csu50	?	no significant similarity			-	Simple	csu50(gfu?)	9.07-9.08
csu54	T12684	no significant similarity			-	Simple	csu54(gfu?)	2.08
csu58	T12688	no significant similarity			-	Simple	csu58(gfu?)	9.05-9.06
csu60	T12690	no significant similarity			-	Simple	csu60(gfu?)	1.05
csu1	T12705	no significant similarity			-	Complex	csu01(gfu?)	4.05-4.06
csu93	T12714	no significant similarity			-	Simple	csu93(gfu?)	7.01-7.02
csu95	T12716	rice dbEST		D15970	-	Simple	csu95(gfu?)	9.01
csu100	T12717	no significant similarity			-	Complex	csu100(gfu?)	4.05-4.06
csu103	T12719	rice dbEST	65%	D24020	-	Simple	csu103(gfu?)	10.02-10.03
csu147	T12740	no significant similarity			-	Complex	csu147(gfu?)	2.06
csu163	T12747	no significant similarity			-	Simple	csu163(gfu?)	8.09
csu166	T12749	no significant similarity			-	Complex	csu166(gfu?)	2.10,4.05-4.06
csu168	?	no significant similarity			-	Simple	csu168(gfu?)	5.05
csu171	T12752	rice dbEST	84%	D15402	-	-
csu217	T18798	Arabidopsis dbEST	66%	T04175	-	-
csu222	T18802	rice dbEST	83%	D26538	-	-
csu244	T18817	rice dbEST	85%	D23592	-	-
csu245	T18818	Arabidopsis dbEST	66%	Z17549	-	-
csu249	T18819	rice dbEST	80%	D22191	-	-
csu268	T18830	rice dbEST	67%	D15599	-	-
rsp31		no significant similarity			-	Simple	uaz105(gfu?)	1.05
rsp48		no significant similarity				Complex	uaz048(gfu?)	1.01
rsp54		no significant similarity			-	Complex	uaz107(gfu?)	4.01
rsp84		no significant similarity			-	Complex	uaz106(gfu?)	2.04,6.02-6.03
spf16		no significant similarity			-	Complex	uaz31(gfu?)	2.08,7.04 9.07-9.08
spf29		no significant similarity			-	Simple	uaz11(gfu?)	1.04

Please Note: Notes submitted to the Maize Genetics Cooperation Newsletter may be cited only with consent of the authors

Return to the MNL 69 On-Line Index
Return to the Maize Newsletter Index
Return to the MaizeGDB Homepage